School of Pharmacy and Pharmaceutical Sciences, University of
Manchester, Manchester, United Kingdom
Strategies for the prediction of in vivo drug clearance from in
vitro drug metabolite kinetic data are well established for the rat. In
this animal species, metabolism rate-substrate concentration relationships can commonly be described by the classic hyperbola consistent with the Michaelis-Menten model and simple scaling of the
parameter intrinsic clearance (CLint
the
ratio of Vmax to Km) is
particularly valuable. The in vitro scaling of kinetic data from human
tissue is more complex, particularly as many substrates for cytochrome
P450 (CYP) 3A4, the dominant human CYP, show nonhyperbolic metabolism
rate-substrate concentration curves. This review critically examines
these types of data, which require the adoption of an enzyme model with
multiple sites showing cooperative binding for the drug substrate, and
considers the constraints this kinetic behavior places on the
prediction of in vivo pharmacokinetic characteristics, such as
metabolic stability and inhibitory drug interaction potential. The
cases of autoactivation and autoinhibition are discussed; the former
results in an initial lag in the rate-substrate concentration profile
to generate a sigmoidal curve whereas the latter is characterized by a
convex curve as Vmax is not maintained at high
substrate concentrations. When positive cooperativity occurs, we
suggest the use of CLmax, the maximal clearance
resulting from autoactivation, as a substitute for
CLint. The impact of heteroactivation on this approach is also of importance. In the case of negative cooperativity, care in using the
Vmax/Km approach to
CLint determination must be taken. Examples of
substrates displaying each type of kinetic behavior are discussed for
various recombinant CYP enzymes, and possible artifactual sources of
atypical rate-concentration curves are outlined. Finally, the
consequences of ignoring atypical Michaelis-Menten kinetic
relationships are examined, and the inconsistencies reported for both
different substrates and sources of recombinant CYP3A noted.
 |
Introduction |
There have been
several
recent reports highlighting unusual in vitro kinetic behavior for the
metabolism of various drugs by certain members of the cytochrome P450
(CYP)2 enzyme system, in particular CYP3A4 (Ueng et al.,
1997
; Korzekwa et al., 1998
; Shou et al., 1999
). This review provides a
critical examination of metabolism rate-substrate concentration
relationships that cannot be described by the classic hyperbola
consistent with the Michaelis-Menten model and considers some of the
consequences that arise from this kinetic behavior. Specifically, the
cases of autoactivation and autoinhibition are discussed. The former results in an initial lag in the rate-substrate concentration profile
generating a sigmoidal curve (Fig. 1A)
and the latter is characterized by a convex curve due to
Vmax not being maintained at high substrate
concentrations (Fig. 1B). Emphasis is placed on the possible
constraints these findings place on the ability to extrapolate in vitro
data on drug metabolism to predict in vivo pharmacokinetic
characteristics, such as metabolic stability and inhibitory drug
interaction potential.

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Fig. 1.
Hyperbolic and nonhyperbolic relationships
between rate of metabolic formation and substrate
concentration.
Substrate dependence for rates of metabolism (A and B), Eadie-Hofstee
plots (C and D), and clearance plots (E and F) for enzymes showing
either standard Michaelis-Menten (dashed curves), sigmoidal (solid
curves in A, C, and E), or substrate inhibition (solid curves in B, D,
and F) kinetics. For each curve both Vmax
and Km (S50) are
constant (10 and 50, respectively), and n and
Ksi values are 1.5 and 75, respectively.
|
|
 |
Use of the Michaelis-Menten Model for Describing Drug Metabolite
Kinetics In Vitro |
CYPs
are responsible for the metabolism of a wide variety of drugs and other
foreign compounds and their unusual lack of substrate specificity may
explain many of the complexities in the operation of this family of
isoforms (Guengerich, 1995
, 1997
; Lewis, 1996
). However, the kinetic
properties of these enzymes are often described satisfactorily by the
classical Michaelis-Menten model (eq. 1):
|
(1)
|
where v is the velocity of the metabolic reaction, and
S is the substrate concentration. For CYP, as with many enzymes, the Km should not be assigned any mechanistic
meaning as it merely describes the substrate concentration at which the
rate of metabolism is 50% of Vmax.
Most metabolite kinetic studies involve the use of hepatic microsomes,
which contain a mixture of several CYP isoforms with overlapping
specificity, and the observed rates of metabolism reflect the net
effect of several protein-drug interactions. In some cases there may be
a smoothing over of any irregularities and the kinetics may look
hyperbolic due to the `canceling out' of different kinetic features.
In other cases, complications can arise due to the differing impact of
several isoforms at different substrate concentrations. Such
complications are absent when purified and recombinant enzymes are
used, and for many drugs metabolic kinetics can be analyzed
appropriately by the Michaelis-Menten equation (for example,
Tassaneeyakul et al., 1993
; Veronese et al., 1993
; Zhang and Kaminsky,
1995
; Ellis et al., 1996
; Rodrigues et al., 1996
; Yamazaki et al.,
1996a
; Olesen and Linnet, 1997
; Lasker et al., 1998
).
One valuable application of the Michaelis-Menten model has been in the
area of scaling in vitro kinetic data to predict the in vivo clearance
of drugs (Houston, 1994
). As therapeutic drug concentrations rarely
approach the Km, the first order limit of eq. 1 is applicable to describe the rate of metabolism in vivo. The
ratio of Vmax to
Km provides the parameter, intrinsic
clearance (CLint), which defines the rate
of metabolism for a given drug concentration (eq. 2):
|
(2)
|
Alternatively a single point determination of
CLint may be made at one substrate
concentration, provided that this concentration is markedly less
(<10%) of the Km value. For the present
purposes the ratio v/S will be regarded as the clearance
(CL) for a given substrate concentration.
As an in vitro parameter, CLint, expresses
inherent metabolic activity in terms of unit of enzyme (often per
picomole for the CYP recombinant enzyme, but more frequently per
milligram of microsomal protein or per million cells). This descriptor
of the subsystem (whether enzyme, microsomes, or isolated cells) can be
scaled to the corresponding in vivo parameter when the total content of
enzyme (microsomal protein or hepatocellularity) for the liver is known
(Houston, 1994
). However, the full capacity of the organ will only be
estimated when appropriate allowance is made for the consequences of
both parallel and sequential pathways of metabolism. The integration of
the total hepatocellular activity with the other physiological
determinants of liver clearance, namely, blood flow and drug binding in
the blood matrix, requires the use of a pharmacokinetic model (e.g.,
the venous equilibration liver model; Wilkinson, 1987
) and the
assumptions of these models should be fully appreciated. To complete
the sequence of data manipulations and provide the in vivo clearance
prediction, consideration must be given to parallel routes of
elimination (e.g., renal excretion) as well as to extrahepatic sites of
metabolism. Despite its simplistic view of a complex process, this
scaling strategy has been found to be valuable for predicting in vivo
clearance from both microsomes and freshly isolated hepatocytes from
rat liver (Houston and Carlile, 1997
; Iwatsubo et al., 1997
; Lin and
Lu, 1997
). However, there has yet be general agreement on the
level of precision that can be realistically accepted from such a crude
procedure (Houston and Carlile, 1997
), and the issue of variability
must be addressed before routine application can be extended to human
tissue (Carlile et al., 1999
).
 |
Deviations from the Michaelis-Menten Relationship for CYP |
One of the assumptions of the Michaelis-Menten model implicit in
applying the above scaling strategy is the premise that
substrate-enzyme interactions occur at only one site per enzyme and
that each site operates independently from the others. There is
abundant evidence that for at least one major human cytochrome, CYP3A4,
this is not the case (for example: Schwab et al., 1988
; Andersson et
al., 1994
; Shou et al., 1994
, 1999
; Lee et al., 1995
; Ueng et al., 1997
; Wang et al., 1997
; Korzekwa et al., 1998
). There are particular kinetic features for several CYP3A4 substrates that cannot be explained
within the context of the Michaelis-Menten model and require the
adoption of an enzyme model with multiple sites showing cooperative
binding for the drug substrate. Recent evidence suggests that CYP3A may
not be the only CYP isoform prone to these features (Ekins et al.,
1998
; Korzekwa et al., 1998
; Venkatakrishnan et al., 1998
).
The number of drugs whose in vitro kinetics show deviations from the
standard hyperbolic rate-substrate concentration relationship has grown
considerably since the first demonstration of autoactivation for
6
-hydroxylation of progesterone in 1988 (Schwab et al., 1988
). Examples of drugs showing both positive or negative cooperative effects
are given in Table 1. As stated earlier,
two characteristic types of curves have been reported: 1) sigmoidal,
believed to result from autoactivation, and 2) convex, resulting from
substrate inhibition. Both give characteristic curved Eadie-Hofstee
plots (see Fig. 1, C and D) that deviate from the linear relationship expected from the Michaelis-Menten model and are useful diagnostic plots for identifying such behavior. This can be particularly valuable
when a wide substrate concentration range has been studied and
sigmoidicity is occurring at relatively low concentrations and can be
easily missed on the conventional rate plot.
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TABLE 1
Examples of nonhyperbolic rate-substrate concentration profiles for CYP
substrates using microsomal preparations of human liver and
heterologously expressed systems
|
|
Negative cooperativity could alternatively lead to an apparent biphasic
Michaelis-Menten curve, identical in form to that frequently observed
when two enzymes (a high-affinity, low-capacity enzyme and a
low-affinity, high-capacity enzyme) contribute to a particular
metabolic reaction. However, to date there appear to be only two
examples of this behavior in recombinant CYP3A4 systems (Clarke, 1998
;
Korzekwa et al., 1998
). However, this situation may be a reflection of
the more extensive use of human liver microsomes rather than pure
enzyme systems, as well as the lack of sufficient data points. Our
considerations center on the two more commonly reported effects
illustrated in Fig. 1. Although there is much to be elucidated at the
molecular level concerning the actual binding processes responsible for
these multisite interactions, the net consequences in the kinetic
profile can be addressed now.
Two Cases of Nonhyperbolic In Vitro Kinetics.
These two cases of homotropic effects are of importance as neither
allow estimation of CLint in vitro by the
standard method previously described. Figure 1 contrasts the kinetic
features of autoactivation and substrate inhibition with the hyperbolic case and shows the relationships between rate of metabolism and substrate concentration for the three cases. The dashed and solid curves (Fig. 1A) refer to the Michaelis-Menten model and the sigmoidal rate plot, respectively. The latter can be described by the Hill equation (eq. 3):
|
(3)
|
where substrate concentration resulting in 50% of
Vmax (S50) is
analogous to the Km parameter in eq. 1, and
n is the Hill coefficient. As in the case of eq. 1 no
mechanistic meaning should be associated with either of these
parameters; they are merely useful descriptors of the data.
For the solid curve in Fig. 1B (substrate inhibition case), although a
hyperbolic-type curve is apparent at low concentrations, there is no
clearly defined plateau at high substrate concentrations and rates
decrease as substrate concentrations are further increased. Hence with
substrate inhibition, the rate plot is convex, and it is notable that
the maximum rate falls short of the true
Vmax for the reaction. Substrate inhibition
can be considered to be analogous to an uncompetitive type of
inhibition mechanism and can be described by eq. 4:
|
(4)
|
where Ksi is the constant describing
the substrate inhibition interaction.
The corresponding Eadie-Hofstee plots, which are valuable diagnostic
plots, are shown in Fig. 1, C and D. Whereas hyperbolic curves
transform to a linear function, characteristic curves are evident for
both sigmoidicity and substrate inhibition. Again dashed lines and
solid lines denote the Michaelis-Menten and nonMichaelis-Menten cases,
respectively. Figure 1, E and F, shows these cases in the form of
clearance plots (v/S versus S), which is helpful within the
present context for equating in vitro with potential in vivo characteristics. The clearance relationship is plotted against the log
of the substrate concentration to accentuate the independence of
clearance on concentration in the initial section of the curve (substrate concentrations < 10% of the
Km value) which relates to the
Vmax/Km or
CLint term (dashed curve for the
Michaelis-Menten case).
With autoactivation, the sigmoidal rate plot translates to a gradual
increase in clearance as substrate concentration is increased to reach
a maximum (solid curve in Fig. 1E) followed by a decrease in clearance
due to saturation, as seen for the Michaelis-Menten case. This
relationship can be described by eq. 5:
|
(5)
|
In the case of substrate inhibition, clearance initially follows
the Michaelis-Menten case but decreases more rapidly in the saturation
portion of the curve due to the impact of the inhibition effect (solid
curve, eq. 6). It is apparent that at low substrate concentrations
(relative to Km) and provided
Ksi is appreciably larger than
Km, this relationship will have the same
limit at low values of S as the Michaelis-Menten case (eq. 2):
|
(6)
|
Mechanistic View.
Equations 3 and 4 are empirical in nature, and there are advantages in
not assigning a more detailed enzyme model where one is not required.
However, the unusual kinetics associated with CYP3A have been
attributed to the binding of multiple substrate molecules to the enzyme
(Shou et al., 1994
; Ueng et al., 1997
; Harlow and Halpert, 1998
;
Korzekwa et al., 1998
), and it is important to consider the
interactions occurring between these multiple sites rather than purely
assigning a curve to the data. A more precise description of molecular
events incorporating the binding of multiple substrate molecules can be
achieved with a steady-state, rapid equilibrium approach to the
analysis of the interactions (Segel, 1975
). However, it is important to
be aware that such models do not distinguish between the simultaneous
binding of multiple molecules within a single active site and the
binding of two molecules to two distinct sites, both situations may
result in sigmoidal kinetics or substrate inhibition. The following
kinetic scheme and equation (eq. 7) can
be derived for substrate interactions at two separate binding
sites.
|
|
|
(7)
|
In this scheme Ks represents the
substrate dissociation constant and Kp is
the effective catalytic rate constant. For enzymes with two binding
sites, Vmax is equivalent to 2 Kp/[E]t, where [E]t is the total enzyme concentration. The
Ks changes by the factor
when a second
substrate molecule binds to the enzyme. When
< 1, the binding
affinity for the second substrate molecule is increased, enhancing the
overall product formation rate resulting in autoactivation. An
alternative mechanism for autoactivation involves a change to the
Kp by the factor
when both substrate sites are occupied. When
> 1, the overall rate of the
reaction is increased and if
< 1 the overall rate is
decreased. Thus this model can be used to describe data from substrates
showing both sigmoidicity and substrate inhibition. It is possible that some cases of normal hyperbolic kinetics may result from situations where
and
are equivalent to 1, or when the net effects of interactions with Ks and
Kp are canceled out.
There are no direct relationships between parameters from this model
and the Hill coefficient, n, or the substrate inhibition constant, Ksi. A positive cooperative
effect or sigmoidicity can be observed when the value of
is <1 or
the value of
is >1. Generally using a value of
< 1 to
describe sigmoidal data gives a more realistic approximation of
Vmax that is equivalent to the maximal
velocity calculated from the Hill equation. A negative cooperative
effect is observed when the value of
is >1, resulting in a
biphasic kinetic profile, or when the value of
is <1, resulting in
substrate inhibition. In theory a combination of both positive and
negative effects may be observed resulting from a change to both
and
simultaneously.
Other substrates of CYP3A4 or activators/inhibitors may also interact
with
and
and can result in activation or atypical inhibition
profiles. Heterotropic effectors of CYP3A substrates displaying
nonhyperbolic curves commonly may alter the kinetic profile to generate
a hyperbolic curve; for example, activation by
-naphthoflavone (ANF)
of estradiol (Kerlan et al., 1992
; Ueng et al., 1997
), progesterone
(Domanski et al., 1998
), diazepam (Andersson et al., 1994
), and
carbamazepine (Kerr et al., 1994
) metabolism. Some inhibitors may also
produce a similar effect, for example, diazepam and testosterone
inhibition of terfenadine metabolism (Kenworthy, 1999
); and ANF
inhibition of testosterone and amitriptyline metabolism (Ueng et al.,
1997
).
The difficulty in assigning unique models to explain cooperative
effects has long been appreciated, and there may be several solutions
that satisfactorily model the same data set (Schmider et al., 1996
).
The correct solution cannot be fully identified without additional
knowledge of the substrate-binding characteristics of the enzyme. Some
workers have favored a model-independent approach through the use of
polynomials (Childs and Bardsley, 1975
; Mayhew et al., 1995
).
 |
Are There In Vivo Consequences? |
It is important to address the practical problem of dealing with
data that cannot be described by the Michaelis-Menten model with a view
to making in vivo predictions, particularly as it is the major human
cytochrome, CYP3A4, for which these complications have been first
identified. Two questions need to be considered. First, are these
kinetic characteristics solely an in vitro phenomenon, and second, how
can we accommodate these characteristics into strategies for in
vitro-in vivo scaling? Whether autoactivation and/or substrate
inhibition occur in vivo is not the moot point, as the initial
steps of any in vitro-in vivo scaling strategy are to describe fully
the in vitro data and then abstract a useful parameter(s) for
extrapolation. Thus the in vitro subsystem will always need to be
characterized in a fully comprehensive manner with limits that may
extend beyond those observed in vivo.
The phenomenon of substrate inhibition is unlikely to be of consequence
in vivo due to the high concentrations required. The in vivo importance
of autoactivation is difficult to gauge, however, as there is no strong
evidence for the manifestation of this cooperative effect in vivo. The
in vivo detection of autoactivation would require detailed and
judiciously planned studies to provide unequivocal evidence for its
reality. This has yet to be carried out; however, an early report of
CYP heteroactivation in vivo came from the group of Conney (Lasker et
al., 1984
). These investigators provided evidence for in vivo
activation of radiolabeled zoxazolamine metabolism by flavone in
neonatal rats based on metabolite formation (measured by recovery of
tritiated water in the total body homogenate). Coadministration of
flavone resulted in a dose-dependent increase in metabolite recovery at
a fixed time point and a time course consistent with activation.
However, in view of the crude nature of the study, additional
experimentation is required to eliminate alternative or additional
explanations that may contribute to these observations.
Autoactivation is not a phenomenon limited to microsomal incubations. A
recent study has shown sigmoidicity for N-demethylation of
dextromethorphan in freshly isolated rat hepatocytes as well as in rat
hepatic microsomes (Witherow and Houston, 1999
). It was proposed that
any endogenous activator(s) would be washed out of both in vitro
preparations during either the isolation procedures, in the case of
hepatocytes, or the homogenization/centrifugation steps, in the
microsomal case. It is of interest that the extent of sigmoidicity (as
judged by the Hill coefficient) for this reaction is more pronounced in
isolated hepatocytes than in microsomes. A similar situation has been
observed for both the N-demethylation and the
3-hydroxylation of diazepam in rat in vitro systems (L. E. Witherow,
unpublished observations). Also, heteroactivation of midazolam
metabolism by ANF has been demonstrated in human hepatocytes (Maenpaa
et al., 1998
).
It would appear prudent to assume that in vivo the CYP3A system is
activated as endogenous steroid hormones (e.g., testosterone and
progesterone) and dietary flavones are established as the prototypic
activators. Thus the phenomenon of activation must be incorporated into
the treatment of in vitro data when prediction of in vivo events is the
aim of the study. This will not be a trivial issue and heteroactivation
is likely to be an important source of variability between individuals
due to different dietary intakes and hormonal changes, which will
compound further the issue of variability in expression of these enzymes.
 |
Calculation of Maximal Clearance due to Autoactivation
(CLmax) |
Recent reviews assessing the utility of in vitro predictions of
drug clearance (Houston and Carlile, 1997
; Iwatsubo et al., 1997
) have
shown that unsuccessful examples are usually cases of underprediction.
This is particularly evident for human hepatic microsomes. One
explanation may lie in unidentified sigmoidal kinetic characteristics
and the lack of any allowance for autoactivation.
Consideration of Fig. 1E shows there to be a well defined maximum for
the clearance of a drug which is subject to autoactivation. Thus
CLmax provides an estimate of the highest
clearance attained as substrate concentration increases before any
saturation of the enzyme sites. Thus if the assumption is made that in
vivo activation occurs via endogenous activators (e.g., steroids), then
CLmax may be an appropriate parameter for
describing the salient feature of the subsystem that can be used for
predictive purposes. Equation 8 describes the relationship between the
various parameters in the Hill equation and
CLmax (derivation shown in Appendix).
|
(8)
|
For simplicity, the second term containing the n values
can be defined as H, the Hill factor, thus eq. 8 can be rewritten as
eq. 9.
|
(9)
|
There is a minimum value for H of 0.5, which corresponds to
n = 2. When 1 < n < 2, H ranges
from 1 to 0.5 and as n increases from 2 to 5 the value of H
gradually increases from 0.5 to 0.6.
It must be recognized that there are several artifactual sources of
sigmoidicity. Therefore it is essential to eliminate the effect of any
nonenzymatic processes that may impinge on the shape of the
rate-substrate concentration profile (Witherow and Houston, 1999
).
Table 2 lists some of the processes that
would lower the concentration of substrate available to the enzyme
relative to the concentration calculated, after the addition of a
particular quantity of substrate to the incubation. Three of these
processes involve saturable events, and the impact would be
concentration-dependent
maximal at the low concentrations and tapering
off to no effect at high concentrations.
Ideally turnover of substrate should be <10% to comply with initial
rate conditions, yet analytical limitations may prevent this, and
correction for loss of substrate during the incubation is required to
avoid artifactual conclusions. Similar care is required to avoid
sequential metabolism complications.
Futile binding (Obach, 1996
, 1997
) has recently received attention as a
source of complications for in vitro work and it is frequently related
to the protein content of the incubation. However, this may be of less
concern with the use of recombinant enzymes as the high level of
expression removes the need to incubate with high protein
concentrations and reduces the opportunity for futile binding to
protein/lipid sites. Nevertheless, cases of sigmoidicity for all
microsomal preparations should be confirmed at more than one protein
concentration to eliminate this artifact. An additional consideration
that arises with the use of cellular systems is the need to evaluate
the role of active transporter systems to detect any inconsistency
between cellular and media concentrations of drug substrates. If the
dissociation constant associated with either futile binding or cellular
efflux is significantly less than the Km
for metabolism, sigmoidicity could arise in the rate-substrate concentration profile in the absence of any enzyme autoactivation.
Other reasons for sigmoidicity or convex rate-substrate concentration
profiles include analytical and solubility issues, which result in a
lack confidence in the data for the extremes of the concentration
range. Finally it must be stated that a minimum of ten data points,
suitably dispersed over the curve, are required before sigmoidicity can
be considered as a suitable description of a data set.
It is of interest to note that the substrate concentration at which
CLmax occurs
(Smax) is a function of both
S50 and n (see Appendix). This will vary considerably among drugs, as
illustrated in Table 3; the lowest being
4 µM for progesterone and the highest over 100 µM for
amitriptyline. Smax is in all cases below
the S50 except for the aflatoxin B1
metabolites for which the n values are greater than for the
other substrates shown. For four drugs there are data in more than one
expression system. In all cases there is good agreement between the
parameters, Smax and
S50, although both
Vmax and CLmax
differ for each expression system. The same trend for these four
parameters is apparent when the two pathways of metabolism for diazepam
and aflatoxin B1 are compared. The full impact of the activation of
CYP3A4 in vivo may be difficult to assess as the concentrations of
heteroactivator(s) as well as drug concentrations will need to be taken
into account.
Heteroactivation of CYP3A Reactions.
It is of interest to speculate that the effects of a heteroactivator on
a CYP3A reaction can be additive to autoactivation. As the
binding site(s) and/or the affinity for heteroactivators is likely to
be different from those of the substrate, a much greater effect may
result. The additive effect may be restricted to low substrate
concentrations and may plateau as the enzyme becomes saturated and at
high concentrations of activator inhibition may be seen due to
competition at the binding site(s). However, this will not necessarily
be the case as heteroactivation may be additive at all concentrations
if the activator binds at a separate site, or if the allosteric change
in the binding of the activator is much greater that with the substrate itself.
Figure 2 shows an example of one type of
situation with the 3-hydroxylation of diazepam by microsomes (obtained
from the Gentest Corporation) from
-lymphoblastoid (
-LM) cells
expressing human CYP3A4 and CYP reductase (Kenworthy, 1999
). At 120 µM, the enzyme is fully autoactivated and the maximum clearance is
attained (0.06 µl/min/pmol CYP). More activation may be observed at
this concentration by the addition of testosterone as a
heteroactivator. However, more substantial activation is seen at lower
substrate concentrations and there is a clear trend to lower values of
Smax as the testosterone concentration and
CLmax increase 2-fold.
This raises the philosophical issue of how to define activation. Is it
full activation by whatever means, or maximal attainable for the
substrate without more supplementation of activators? This will always
be an imponderable issue for in vitro studies. Until the precise nature
of in vivo activators are known, their appropriate concentrations and
the likely extent of their effects cannot be addressed.
 |
Consequences of Ignoring Nonhyperbolic Kinetic Behavior |
Although the above phenomena are commonly seen in kinetic
profiles, they are not always appreciated by the investigators, and
several examples exist of standard Michaelis-Menten hyperbolic curves
forced through the data rather than the adoption of more suitable
models. In other cases the paucity of data points precludes any
meaningful selection of an alternative model. What will the consequences be of ignoring the nonhyperbolic nature of a kinetic profile and fitting the Michaelis-Menten equation? The extent of error
and the consequences when scaled for in vivo prediction can be
considered for three situations:
1. For substrate inhibition, the consequences are clear in Fig. 1B.
Substantial underestimation of Vmax will
occur by merely ignoring the high concentration data points and forcing
a standard Michaelis-Menten model through the remaining lower substrate
concentration data. Also, Km would be
poorly estimated. Thus there is a need for full description of the
profile to allow for the impact of this phenomenon if
CLint is to be calculated from the
Vmax/Km. Alternatively v/S for low substrate concentrations could be
used, providing the substrate concentration selected is below the
Km. (see Fig. 1F).
2. For a sigmoidal curve, there may be either an underestimation or
overestimation of CLint if a hyperbolic
curve is forced through the data and the parameters
Vmax and Km are
used to calculate CLint. How precisely the
clearance estimate will be altered by the model misspecification will
vary from case to case and will be dependent on the number and quality
of the data points. The Vmax value may be
overestimated but it is likely that the Km
(S50) term will be most affected. Thus it
is probable that CLint calculated from a
misspecified
Vmax/Km ratio
will underestimate CLmax.
Another important consideration is the estimation of metabolic
stability of new chemical entities in terms of in vitro clearance, a
common practice within the pharmaceutical industry. This is usually
achieved through the use of substrate concentration depletion time
profiles, and clearance values are obtained either directly from the
area under the curve or from the microsomal half-life. This is usually
carried out at one substrate concentration, often in the 1-µM region,
based on the rationale that this concentration should be well below the
(unknown) Km value. If consideration is not
given to the phenomenon of activation, underestimates of clearance will
occur. Taking the example of diazepam illustrated in Fig. 2 and
discussed above, the microsomal half-life at 1 µM is five times
longer than at 100 µM (close to the
Smax), reflecting the nonactivated and
fully activated clearance.
3. For inhibition studies, models are fitted to data that account for
the effect of various concentrations of inhibitor, including the
absence of inhibitor. It is clear from the literature that in several
inhibition studies there are insufficient data points to allow any
detailed examination of the effects of atypical kinetic profiles. If
atypical kinetic data are misspecified because in the presence of
inhibitor, hyperbolic curves are seen and false Ki values may be obtained. Once again the
degree of inaccuracy is hard to predict, however, if the objective is
to place compounds in rank order for comparative purposes, sensible
conclusions may not always be obtained.
These concerns are of particular relevance within the current trend for
adopting high-throughput screening approaches. Many investigators work
with only one substrate concentration and assess inhibitory potential
by the concentration responsible for a 50% inhibition value
(I50). Inhibitory screens may be subject to
error when due consideration is not given to the substrate
concentration used, particularly if CYP3A has a major involvement in
the metabolism of the drugs of interest and multisite effects are
apparent. The shape of the velocity curve for a CYP3A4 substrate should
be taken into account in the design of inhibition screens. The
consequences of ignoring atypical concentration-effect profiles have
been highlighted by Leff and Dougall (1993)
. When characterizing
inhibition curves for CYP3A4, the importance of the substrates should
be placed on obtaining a sufficiently large number of data points at
several substrate concentrations to avoid misinterpretation of the
data. Detailed consideration should be given to the fractional
inhibition-inhibitor concentration plot, as this may display
characteristics indicative of multisite effects for both substrate and
inhibitor. The logistic function (eq. 10) routinely used may require a
slope factor different from 1 (for the same reason as the n
value for a sigmoidal rate-concentration plot):
|
(10)
|
where fI is the fractional inhibition
for a given inhibitor concentration, I. Figure
3 shows three examples of
inhibitor-substrate interactions in microsomes (obtained from the
Gentest Corporation) from
-LM cells expressing human CYP3A4 and CYP
reductase (Kenworthy, 1999
). They illustrate the range of different
inhibitory responses, which may occur when inhibitors and/or substrates
bind to multiple sites. For example, the inhibition of testosterone by
terfenadine shows no cooperativity (n = 1), the
inhibition of diazepam by terfenadine shows negative cooperativity
(n = 0.58), and the inhibition of erythromycin by
testosterone shows positive cooperativity (n = 1.55).

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|
Fig. 3.
Examples of fractional inhibition of
metabolism in microsomes from -LM cells expressing human CYP3A4 and
CYP reductase.
Data (Kenworthy, 1999 ) show three substrate-inhibitor interactions:
curve 1, where the inhibitor shows no cooperativity [inhibition of
testosterone metabolism (50 µM) by terfenadine], curve 2, where the
inhibitor shows negative cooperativity [inhibition of diazepam
metabolism (10 µM) by terfenadine], and curve 3, where the inhibitor
shows positive cooperativity [inhibition of erythromycin metabolism
(50 µM) by testosterone]. Inhibitor concentrations are normalized
for their Ki values (3, 10, and 24 µM for curves 1, 2, and 3, respectively).
|
|
Inhibition or activation at multiple sites may also be apparent,
resulting in partial or cooperative inhibition or sigmoidal curves that
revert to hyperbolic curves in the presence of an activator competing
at two binding sites. Additionally, the effect of some CYP3A4 modifiers
may differ according to the particular CYP3A4 substrate selected
(Kenworthy et al., 1999
), stressing the importance of investigating
more than one CYP3A4 substrate in inhibition screens. At present there
is not a simple solution for accurately predicting CYP3A4 interactions.
If a meaningful understanding of the interactions is required, there
appears to be little alternative to investigating a wide concentration
range of inhibitor and substrates and analyzing the data using a model incorporating the binding of multiple substrate molecules.
 |
Inconsistencies between Substrates and Sources of Recombinant
CYP3A4 |
Interpretation of the nonhyperbolic type behavior discussed
above is complicated by the fact that such effects are not consistently seen with all CYP3A substrates. The variety of observed effects may
result from a number of scenarios, for example, some substrates may
only be able to interact with one binding site, due to steric restrictions, for example, the macrolide antibiotics. In the case of
small molecular weight substrates, two or more molecules may bind with
only one site, resulting in metabolism, and the second substrate
molecule having no effect on the first. As highlighted earlier, some
substrates may interact with two sites without causing any significant
change to
and
, generating a hyperbolic curve.
Another complicating factor in the study of atypical kinetics is
the apparent variability in kinetic behavior between different enzyme
sources. It is hard to pinpoint if this is due to the variability in
the experimental conditions used, including the use of different buffers as noted by Maenpaa et al. (1998)
and the role of various cofactors including CYP reductase and cytochrome
b5 (Peyronneau et al., 1992
; Yamazaki et
al., 1996b
), or if it is due to discreet differences in the enzyme
active site between different recombinant sources. The activation and
substrate inhibition phenomena may be highly dependent on a particular
folding pattern of the protein or the location of the protein in
different membrane sources. The effects of substrates on the binding
kinetics of carbon monoxide (Koley et al., 1996
) suggests that CYP3A4
may exist as multiple conformers with different kinetic properties.
Slight changes in the flexible structure of CYP3A4 may alter the active
site and influence the complex interactions between multiple molecules. It is of interest to note that for certain drugs (amitriptyline, carbamazepine, nifedipine, and testosterone) sigmoidicity is seen in
some expression systems, but not others (see Table 1).
In the past a lack of analytical sensitivity has restricted the
substrate concentration range used, but this is not a current limitation. Comprehensive data sets are particularly important for
substrates showing atypical kinetics to ensure a reasonable degree of
confidence in the model parameters. Recent kinetic observations with
CYP3A substrates highlight the complexity of this enzyme and our
comparatively superficial approach. Absence of nonhyperbolic characteristics for a particular substrate may arise as a result of a
lack of cooperative effects or, as discussed earlier, the canceling out
of different interaction factors, thus the phenomenon becomes
nonidentifiable rather than being absent.
 |
Conclusion |
A strategy for in vitro-in vivo extrapolation is well established
for use with rat data. In this animal species hyperbolic profiles are
very common. Extension to the human situation where CYP3A dominates
brings more complexities, one of which is nonhyperbolic curves. The
question of whether it occurs in vivo is unanswered yet the problem of
equating in vitro with in vivo for CYP3A substrates remains a topical
issue that should be addressed now and not delayed until the
intricacies of CYP3A are resolved. Recent articles (Ekins et al., 1998
;
Korzekwa et al., 1998
) have indicated that there may be other CYPs, in
addition to 3A4, that show nonhyperbolic kinetic behavior. Furthermore,
with the use of human liver microsomes, there will always be a high
likelihood that CYP3A4, due to its particularly broad substrate
specificity, will play some role in the metabolism of the vast majority
of drugs. Thus even a relatively selective substrate for CYP2C9 or
CYP2D6 may have its microsomal kinetics 'contaminated' with CYP3A4
complexities, particularly when activation comes into play.
The use of recombinant and/or purified enzymes, as opposed to native
hepatic mixes, has allowed the identification of unequivocal kinetics
under well controlled conditions. When negative cooperativity is
manifested as a convex rate-substrate concentration profile, the
Vmax/Km
approach to CLint determination is only
valid if the correct equation (eq. 6) is used to obtain the parameters.
In the case of positive cooperativity, this review suggests
CLmax as a pragmatic solution. Time will
tell whether this particular simplification offers a solution that is
both robust and comprehensive. The high level of activity surrounding
the CYP3A subfamily of enzymes is providing much molecular information
that will necessitate continued refinement of our approaches to
analyzing and making optimal use of in vitro kinetic data.
We thank Drs. S. Clarke, D. Carlile, and L. Witherow for valuable discussions.
Received August 11, 1999; accepted November 2, 1999.
K.E.K. was supported by a SmithKline Beecham studentship.