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Vol. 30, Issue 7, 845-852, July 2002
Gentest, a BD Biosciences Company, Woburn, Massachusetts
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Abstract |
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We have tested a panel of 29 cDNA-expressed rat and human enzymes with 9 fluorometric substrates to determine the P450 isoform selectivity in the catalysis of the substrates to fluorescent products. The substrates examined were dibenzyl fluorescein, 7-benzyloxyquinoline (BQ), 3-cyano-7-ethoxycoumarin, 3-cyano-7-methoxycoumarin, 7-methoxy-4-trifluoromethylcoumarin, 3-[2-(N,N-diethyl-N-methylamino)ethyl]-7-methoxy-4-methylcoumarin (AMMC), 3-[2-(N,N-diethyl-N-methylamino)ethyl]-7-methoxy-4-trifluoromethylcoumarin, 7-benzyloxyresorufin, and 7-benzyloxy-4-trifluoromethylcoumarin (BFC). For most substrates, multiple cDNA-expressed cytochrome P450 isoforms were found to catalyze the formation of the fluorescent product. However, among the combinations tested, rat CYP2D2 displayed high selectivity for AMMC demethylation (a substrate selective for CYP2D6 in human liver microsomes). AMMC demethylation activity was 15-fold lower in microsomes isolated from female Dark Agouti rats, a model known to have a low abundance of CYP2D2, and apparent KM values were similar for cDNA-expressed CYP2D2 and male Sprague-Dawley liver microsomes. BFC dealkylation and BQ dealkylation were selective but not exclusive for human CYP3A4. A small role for CYP1A2 could be demonstrated. The CYP3A4 selectivity in hepatic microsomes was supported by studies using chemical and antibody inhibitors and a correlation analysis within a panel of liver microsomes from individual donors. BQ demonstrated a higher degree of selectivity for and higher rates of metabolism by CYP3A than BFC. However, per unit enzyme the fluorescent signal is lower for BQ than BFC. AMMC, BQ, and BFC should find uses as enzyme-selective probe substrates.
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Introduction |
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Cytochrome
P450 (P4501) enzymes are the principal enzymes
that catalyze the metabolism of drugs and other xenobiotics. Analysis of drug metabolism by the cytochrome P450 system has become an important part of the drug discovery/development process, and numerous
assay methodologies have been developed. Cytochrome P450 activity
assays which have fluorometric endpoints are advantageous in that they
offer high sensitivity and are often direct and homogeneous assays.
These properties enable testing larger numbers of experimental conditions with cost effective, higher-throughput methodologies. Indeed, fluorometric P450 substrates have been used for many
applications in toxicology and drug discovery and development (Ullrich
and Weber, 1972
; Burke et al., 1985
; DeLuca et al., 1988
; White, 1988
; Mayer et al., 1990
; Buters et al., 1993
; Kennedy and Jones, 1994
; Crespi et al., 1997
; Onderwater et al., 1999
; Price et al., 2000
; Renwick et al., 2000
).
Some fluorometric probes have been reported to be selective for various
P450 isoforms in liver microsomes, including 7-methoxyresorufin and
7-ethoxyresorufin for CYP1A2 (Burke et al., 1994
),
3-(3,4,-difluorobenzyloxy)-5,5-dimethyl-4-(4-methyl-sulfonylphenyl)-5H-furan-2-one for CYP3A4/5 (Chauret et al., 1999
), and
2,5-bis(trifluoromethyl)-7-benzyloxy-4-trifluoromethylcoumarin for
CYP3A4 (Renwick et al., 2001
). However, there are many enzymes for
which selective substrates have not yet been identified. This limitation has been addressed in some applications by the use of
individual cDNA-expressed enzyme preparations.
We have examined nine fluorometric substrates for their capacity to serve as cytochrome P450 form-selective probe substrates in a panel of 29 rat and human cytochrome P450 enzymes. Three of these substrates were found to be suitable for use as P450 isoform-selective probes in both rat liver microsomes (RLM) and human liver microsomes (HLM).
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Materials and Methods |
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Chemicals, Enzymes, and Antibodies.
Microsomes were obtained from BD Gentest from
baculovirus-infected insect cells (Supersomes) or from metabolically
competent human B-lymphoblastoid cell lines that stably express rat
CYP2E1 or rat CYP2A1. Liver microsomes from humans and SD rats were
obtained from BD Gentest. Liver microsomes from female Dark Agouti (DA) rats were a kind gift of Dr. Elizabeth Laurenzana (University of
Arkansas for Medical Sciences, Little Rock, AR). The substrates dibenzyl fluorescein (DBF), 7-benzyloxyquinoline (BQ),
3-[2-(N,N-diethyl-N-methylamino)ethyl]-7-methoxy-4-methylcoumarin (AMMC),
3-[2-(N,N-diethyl-N-methylamino)ethyl]-7-methoxy-4-trifluoromethylcoumarin (MeAMFC), 7-benzyloxy-4-trifluoromethylcoumarin (BFC), and metabolites hydroxyquinoline,
3-[2-(N,N-diethyl-N-methylamino)ethyl]-7-hydroxy-4-methylcoumarin, 3-[2-(N,N-diethyl-N-methylamino)ethyl]-7-hydroxy-4-trifluoromethylcoumarin were obtained from BD Gentest. The substrates 3-cyano-7-ethoxycoumarin (CEC), 3-cyano-7-methoxycoumarin (CMC),
7-methoxy-4-trifluoromethylcoumarin (MFC), resorufin benzyl ether
(BzRes); metabolites 7-hydroxy-4-trifluoromethylcoumarin, 3-cyano-7-hydroxycoumarin; and inhibitors furafylline, ketoconazole, and sulfaphenazole were obtained from Ultrafine Chemicals (Manchester, UK). Fluorescein, quinidine, and
-naphthoflavone were obtained from
Sigma-Aldrich (St. Louis, MO) and resorufin was obtained from Molecular
Probes (Eugene, OR). All other chemicals (reagent grade) were obtained
from Sigma-Aldrich. Monoclonal antibodies inhibitory to CYP1A2 (catalog
no. 458312) and CYP3A4 (catalog no. 458334) were obtained from BD Gentest.
Incubations with cDNA-Expressed Enzymes and Liver Microsomes.
Assays were conducted in 96-well microplates. Potassium phosphate
buffer (0.1 ml) containing an NADPH-regenerating system [final
concentrations were 1.3 mM NADP+ (or 0.008 mM for AMMC only), 3.3 mM
glucose 6-phosphate, 0.4 U/ml glucose-6-phosphate dehydrogenase] was
added to each well. The plate was then warmed to 37°C and the
reaction initiated by the addition of prewarmed enzyme/substrate (E/S)
mix. For experiments using cDNA-expressed enzymes, the E/S mix
contained buffer, P450 enzyme (2.5-87 pmol/ml final), control
microsomal protein prepared from insect cells infected with wild-type
baculovirus (to standardize protein to approximately 0.25 mg/ml final)
and substrate (1.0-50 µM final). For experiments with liver
microsomes, the E/S mix was the same except that liver microsomal
protein concentration was 0.5 mg/ml. Reactions were terminated after 5 to 45 min by addition of 75 µl 80:20 acetonitrile:0.5 M Tris base or,
for DBF only, 2 N NaOH. Specific parameters are provided in Tables 2
through 4 (bottom). Previous work with some of these enzyme/substrate
pairs (Crespi et al., 1997
, 1998
; Stresser et al., 2000
; Chauret et
al., 2001
) and preliminary experiments were used to optimize
experimental conditions (incubation times, buffer, protein, and
substrate concentrations) for the major human drug-metabolizing enzymes
(e.g., cDNA-expressed CYP1A2, CYP2C9, CYP2C19, CYP2D6, and CYP3A4) and
liver microsomes. The substrate concentrations chosen were at or near
the apparent KM for one of the
enzymes, and the conditions of where metabolite production was linear
with time and protein. Similar conditions were used with the other
enzymes and rat P450s. However, because of the number of
enzyme/substrate pairs tested (n = 247), incubation times, protein concentrations, and substrate concentrations were not
individually optimized. Fluorescence signal was measured using a
FLUOstar model 403 fluorescence plate reader (BMG Labtechnologies Inc.,
Durham, NC) and the metabolite quantified by standard curves of the
metabolite. The wavelengths used for analysis are shown in Table
1.
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Incubations of Substrates with Single Donor Human Liver Microsomes. Assays were conducted in 96-well microplates in a 200-µl volume as described above. Substrate concentrations were 50 µM BFC and 40 µM BQ. The final concentration of microsomal protein was 0.025 mg/ml for incubations with BFC and 0.1 mg/ml for incubations with BQ. Reactions were terminated after 15 min (BFC) or 30 min (BQ) by addition of 75 µl 80:20 acetonitrile:0.5 M Tris base. Fluorescence signal was measured using a FLUOstar model 403 fluorescence plate reader.
Enzyme Kinetics Analysis.
Kinetic analyses of metabolite formation was initially assessed by
visual examination of Eadie-Hofstee plot. A single
KM (rectangular hyperbolic) model was
suggested by presence of a straight-line plot. When the plot deviated
from linearity (e.g., "L"-shaped or curvelinear), a multiple
KM or allosteric mechanism was
suggested. The Hill equation was invoked when a pure allosteric model
was indicated (Segel, 1993
). For the HLM/BQ and HLM/BFC plots, a
multiple KM and allosteric mechanism
was suggested. In those cases, the following equation was applied:
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Incubations of Liver Microsomes with Enzyme-Selective Chemical
Inhibitors.
Assays were conducted in 96-well microplates in a 200-µl volume as
described above. Potassium phosphate buffer (0.1 ml) containing an
NADPH-regenerating system [final concentrations were 200 mM potassium
phosphate, 1.3 mM NADP+, 3.3 mM glucose 6-phosphate, 0.4 U/ml
glucose-6-phosphate dehydrogenase] was added to each well, except the
first well in each row, to which 0.144 ml was added. Chemical
inhibitors dissolved in acetonitrile were added in a volume of 6 µl
to the first well in each row of the plate and serially diluted at a
ratio of 1:3 through well 8. The final 50 µl was discarded. Wells 9 and 10 contained no inhibitor, and wells 11 and 12 were used as blanks
(stop solution added before E/S mix). The final concentration of
acetonitrile was 2%. Reactions (except those with furafylline) were
initiated by the addition of prewarmed E/S mix. The E/S mix contained
liver microsomal protein (final concentration was 0.025 mg/ml for BFC
and 0.1 mg/ml for BQ) and substrate (final concentration was 40 µM BQ
or 50 µM BFC). For experiments with furafylline, a preincubation step
was included to allow NADPH-dependent complexation to occur and
maximize inhibitory potential (Bourrie et al., 1996
). In those
experiments, all components except substrate were incubated at 37°C
for 10 min in a volume of 150 µl prior to the addition of BFC or BQ
in a volume of 50 µl. Reactions were terminated after 15 min (BFC) or
30 min (BQ) by addition of 75-µl 80:20 acetonitrile:0.5 M Tris base.
Fluorescence signal was measured using a FLUOstar model 403 fluorescence plate reader. Fluorescence signal from the blanks was
subtracted from signal in all wells.
Incubations of Liver Microsomes with Immunoinhibitory Monoclonal Antibodies. Monoclonal antibodies inhibitory to CYP1A2 and CYP3A4 were used as described in the product insert. Antibody and 25 mM Tris (pH 7.5) were mixed at various ratios in a small volume. Liver microsomes [5 µl (100 µg) for BQ; 1.25 µl (25 µg) for BFC] were added to the antibody-Tris mixture and incubated on ice for 15 min (CYP3A4) or 20 min (CYP1A2). A substrate/NADPH-regenerating system reaction mix was then added to bring the volume to 1 ml. Substrate concentrations were 50 µM BFC and 40 µM BQ. Reactions were terminated after 15 min (BFC) or 30 min (BQ) by addition of 375 µl 80:20 acetonitrile:0.5 M Tris base. Fluorescence signal was measured using a FLUOstar model 403 fluorescence plate reader.
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Results |
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Fluorescent Substrate Metabolism by cDNA-Expressed Enzymes. Using the panels of cDNA-expressed enzymes, AMMC was observed to be highly selective for rat CYP2D2 and human CYP2D6, whereas BQ and BFC were selective for human CYP3A4 (Tables 2 and 3). Overall, BQ exhibited the highest turnover of all substrates tested. However, the low yield of fluorescence per unit metabolite limited the signal to noise ratio with this substrate. CEC was selective for human CYP1A forms and showed a preference for CYP1A1 relative to CYP1A2 in both the human and the rat. The profile for CMC generally tracked that of CEC. In both the rat and human, CYP2E1 metabolized CMC about 6 times more rapidly than CEC. MFC was a substrate for most enzymes with the notable exceptions of both human and rat CYP3A enzymes. MFC showed some preference for CYP2B6 in the human and CYP2C6 in the rat. DBF was also relatively nonselective among both rat and human P450s. CYP1A1 was the most active enzyme in both the rat and the human. Human CYP3A enzymes were more efficient at metabolizing DBF relative to their rat orthologs. BzRes was most rapidly metabolized by CYP1B1 and CYP1A1 in the human and CYP1A1, CYP1A2, and CYP2B1 in the rat. MeAMFC was relatively selective for CYP2D6 in the human. However, the low yield of fluorescence from the metabolite and the low apparent KM for CYP2D6 limits the usefulness of this substrate due to substrate depletion. MeAMFC was not tested with the rat cytochrome P450 panel.
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Characterization of Product Formation in Liver Microsomes. All substrates were actively metabolized in pooled RLM or HLM (Table 4). Catalytic activity levels were generally similar across species. However, SD RLM exhibited 30- to 100-fold greater AMMC and MeAMFC demethylase activity levels compared with human. In contrast, female DA rats exhibited catalytic activity level 15-fold lower than female SD rats and comparable to that found in HLM. BQ and BzRes (and to a lesser extent MeAMFC and DBF) are preferentially metabolized by male SD RLM relative to female.
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number of sites bound by activator)
of 1.8. Sigmoidal enzyme kinetics were observed for BQ with
cDNA-expressed CYP3A4 (S50 = 22 µM;
n = 1.9) and CYP3A5 (S50 = 52 µM; n = 1.5); data fit best to a hyperbolic model with CYP1A2
(KM = 53 µM). The
Vmax for CYP3A4 was ~2.6-fold higher than CYP3A5 and 6-fold higher than CYP1A2. With HLM and BFC, sigmoidal kinetics were observed from 5 to 160 µM
(S50 = 23 µM; n = 1.4). Activity within the 0 to 2.5 µM range exhibited hyperbolic
behavior (KM = 3.8 µM). Attempts to
fit eq. 1 to the HLM/BFC data did not yield meaningful data. Sigmoidal
enzyme kinetics were observed for BFC with CYP3A4
(S50 = 40 µM; n = 1.3) and CYP3A5 (S50 = 33 µM;
n = 1.5), whereas hyperbolic kinetics were observed
with CYP1A2 (KM = 18 µM) and CYP2C19
(KM = 26 µM). Rates of metabolism
could not be determined at substrate concentrations above 160 µM due to the limited solubility of BFC. The
Vmax for CYP3A4 was more than an order
of magnitude higher than the other cDNA-expressed enzymes. With AMMC, product
formation was linear with protein concentration only at low protein
concentrations (below 100 µg/ml). Product formation was linear with
time up to 30 min of incubation. AMMC demethylation exhibited
hyperbolic kinetics in RLM. For AMMC, the apparent
Km values were 8 and 4.6 µM for RLM
and cDNA-expressed CYP2D2, respectively.
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Enzyme-selective Chemical Inhibitors.
The effect of the P450 enzyme-selective chemical inhibitors furafylline
(for CYP1A2), sulfaphenazole (for CYP2C9), ketoconazole (for CYP3A4),
quinidine (for CYP2D6), and
-naphthoflavone (for CYP1A2) on the
dealkylation of BFC and BQ by pooled HLM are shown in Figs.
2 and 3,
respectively. With BQ, a low concentration of 2 µM ketoconazole
inhibited BQ dealkylation more than 90% whereas inhibition was low or
absent with other inhibitors used at concentration ranges generally
considered enzyme-selective (e.g., 10-20 µM).
-Naphthoflavone
stimulated metabolism up to 60% above activity observed in control
wells. A similar pattern was observed with BFC. A low concentration of
0.5 µM ketoconazole inhibited BFC dealkylation more than 90%, and
low concentrations of the other inhibitors did not inhibit BFC
dealkylase activity substantially.
-Naphthoflavone activated BFC
metabolism up to 100% above control. These observations are consistent
with CYP3A4 being the major enzyme involved in BFC and BQ dealkylation
and do not support a significant role for CYP1A2, CYP2D6, and CYP2C9.
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Immunoinhibition Experiments.
Monoclonal antibodies inhibitory to CYP1A2 and CYP3A4 were used to
further discern the relative contributions by these enzymes to BFC and
BQ metabolism (Fig. 4). Using pooled HLM,
up to 63% of BQ metabolism was inhibited by anti-CYP3A4 MAB whereas
81% of CYP3A4-catalyzed testosterone 6
-hydroxylation was inhibited by same ratio of antibody to HLM protein. Donor livers high in CYP3A4
and low in CYP1A2 were affected least by anti-CYP3A4 MAB whereas donors
exhibiting high levels of CYP1A2 but low- to mid-level CYP3A4 were
intermediate. Antibodies inhibitory to CYP1A2 exhibited 10 to
20% inhibition of BQ metabolism regardless of the HLM enzyme sources,
whereas CYP1A2-catalyzed phenacetin O-deethylation was inhibited up to 82%. Relative to BQ metabolism, BFC dealkylation was
inhibited less by anti-CYP3A4 MAB. Pooled HLM metabolism was inhibited
most except at highest MAB/HLM ratios in which donor with highest
CYP3A4 was most susceptible to inhibition (68%). The donor having high
CYP1A2 and low- to mid-level CYP3A4 was affected least (up to 29%
inhibition) by anti-CYP3A4 MAB. Relative to BQ, BFC metabolism was
inhibited to a greater extent by anti-CYP1A2 MAB (17-35%, depending
on HLM enzyme source).
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Catalytic Activity Profiles in a Panel of Liver Microsomes from Human Donors. A panel of liver microsomes prepared from twelve-characterized individual donors was assessed for AMMC, BFC, and BQ dealkylase activities. Dealkylase activity for BFC and BQ significantly correlated with CYP3A4- and CYP2B6-marker catalytic activities as well as total P450 content (Table 6). Dealkylase activities of these two substrates also correlated well with each other (r = 0.87, P < 0.01). When the same tests were run in the presence of 0.5 µM ketoconazole, which selectively inhibits CYP3A4, BFC dealkylase activity was inhibited an average of 84% across the panel. Residual activity correlated significantly (r = 0.87, p < 0.01) with CYP1A2 catalytic activity. This observation suggests a minor role for CYP1A2. In a similar experiment with BQ, 0.5 µM ketoconazole inhibited activity 99%.
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Discussion |
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In this study, we used a panel of 29 cDNA-expressed P450s from rat and human, as well as liver microsomes from rat and human, to test a panel of nine fluorometric substrates to determine their enzyme selectivities. Based on these results, three enzyme/substrate pairs (AMMC/CYP2D2, BFC/CYP3A4, and BQ/CYP3A4) were selected for more detailed follow-up studies to assess enzyme selectivity.
In the present study, cDNA-expressed CYP2D2 but not CYP2D1 catalyzed AMMC-demethylation to a fluorescent product. The selectivity of AMMC for CYP2D2 in RLM was confirmed by comparing catalytic activity in RLM from female DA rats and SD rats. The AMMC-demethylase activity in male and female SD rats was found to be at least 15-fold greater than in female DA rats. In contrast, MFC demethylase activity, catalyzed primarily by CYP2C isoforms, was comparable between the two strains. Thus, AMMC can be used as a selective probe for CYP2D2.
Unlike humans, which express a single CYP2D enzyme (CYP2D6), six CYP2D
isoforms (CYP2D1/2/3/4/5/18) have been identified in rats (Gonzalez et
al., 1987
; Matsunaga et al., 1989
, 1990
; Kawashima et al., 1996
). Dark
agouti rats exhibit a debrisoquine 4-hydroxylase poor metabolizer
phenotype, which is linked to the low abundance of CYP2D2, particularly
in female rats (Yamamoto et al., 1998
; Schulz-Utermoehl et al., 1999
).
The characterization of AMMC as a selective probe for CYP2D6 in HLM has
been published elsewhere by us and others (Chauret et al., 2001
). This
observation was confirmed herein. An initial attempt to identify the
enzyme(s) which contribute to overall activity at high AMMC
concentrations did not yield conclusive results. Further investigation
would be required to determine whether AMMC can be used as a general
probe for CYP2D in other preclinical model species [e.g., CYP2D15, the
CYP2D6 ortholog in dog (Roussel et al., 1998
)].
In the initial cDNA-expressed enzyme panel, we found that BFC was
metabolized by CYP1A1, CYP1B1, CYP2C19, CYP3A4, and CYP3A7, with
predominant activity observed with CYP3A4. This determination was based
on a criterion of metabolite signal to background ratio of 1.5 or
greater. Activities by CYP1A2 and CYP3A5 initially were just below the
cutoff but were detected in subsequent experiments. Apparent
Km or
S50 values were similar for HLM,
cDNA-expressed CYP1A2, CYP2C19, CYP3A4, and CYP3A5 (CYP1A1 and CYP1B1
were not examined further as these enzymes are extrahepatic). However, there seems to be a high-affinity/low-capacity enzyme contributing in
HLM which was not one for which a KM
or S50 was determined. This is because
the apparent KM of 3.8 µM is too
low. Our Km or S50 parameter values for BFC
dealkylation are in agreement with the rank order
KM values for CYP3A4 > HLM > CYP1A2 determined by Renwick et al. (2000)
; however, our value for
CYP1A2 was 4.5-fold higher. The reason for this is unclear but may be
due to differences in experimental methods or enzyme kinetic model applied.
Our evidence indicates that CYP3A4 is the major enzyme catalyzing BFC
dealkylation in HLM but that it is not the sole enzyme involved.
Support for a predominant role of CYP3A4 is based on the high
correlation of BFC dealkylation with the CYP3A4-marker activity
testosterone 6
-hydroxylase activity and the near complete inhibition
of activity in HLM by low concentrations of ketoconazole (while other
inhibitors were not active). Based on the relative activities of the
individual CYP3A forms, we anticipate that CYP3A4 accounts for the
majority of activity, but this has not been proved, as CYP3A
form-selective inhibitors are not available. The enzymatic activity not
inhibited by ketoconazole (on average 14% of the total in the single
donor panel) correlated with phenacetin O-deethylase activity, a CYP1A2 marker. Activity by CYP2C19 activity failed to
correlate significantly (r = 0.29), and cDNA-expressed
CYP2C19 was less active on a unit enzyme basis. This observation
coupled with the low abundance of CYP2C19 relative to CYP3A4 in HLM
suggests a very minor role for CYP2C19. The correlation with CYP2B6 is coincidental as CYP2B6 and CYP3A-marker activities are correlated in
the panel of HLM, and cDNA-expressed CYP2B6 was not active for BFC
dealkylation. Moreover, at 0.5 µM ketoconazole, CYP2B6-catalyzed 7-ethoxy-4-trifluoromethylcoumarin O-dealkylase activity is
inhibited by <10% (D. M. Stresser, unpublished observations).
Experiments with immunoinhibitory antibodies and donors containing
different ratios of CYP1A2 and CYP3A4 suggest a predominant but not
exclusive role for CYP3A4 in BFC-dealkylation. Certainly, a portion of
this activity is catalyzed by CYP1A2 within HLM.
In the aggregate, our data suggest that it is possible to use BFC as a CYP3A4 inhibition probe in HLM. However, for this approach to be robust, care must be taken to select donors (or pools) which are rich in CYP3A4 content and not rich in CYP1A2.
In the initial screen of BQ metabolism with the human cDNA-expressed
enzyme panel, CYP3A4 was catalytically most active. In our experiments,
CYP1A1 (extrahepatic), CYP1A2, and CYP3A5 were also found to metabolize
BQ. As with BFC, BQ dealkylase activity was potently inhibited by
ketoconazole, other inhibitors are not active, and BQ dealkylase
activity correlated with a CYP3A-marker activity in a panel of HLM. No
correlation with the CYP1A2 marker was observed, and the correlation
with a CYP2B6 was not supported by data from cDNA-expressed CYP2B6 or
chemical inhibition experiments. In contrast to the experiment with BFC
in which there was no detectable "residual" activity, 0.5 µM
ketoconazole eliminated 99% of BQ dealkylase activity in the single
donor HLM. As with BFC, a role for other CYP3A forms could not be
defined in HLM. Both HLM and cDNA-expressed CYP3A4 and CYP3A5 displayed
sigmoidal kinetics with BQ, a trait commonly observed with other
substrates for these enzymes (Houston and Kenworthy, 2000
). With HLM,
the data also suggested a high-affinity hyperbolic enzyme component.
This seems to be an enzyme other than CYP1A2, as the
KM estimates for the cDNA-expressed
enzyme did not agree well with those found in HLM. Experiments
with immunoinhibitory antibodies and donors containing different ratios
of CYP1A2 and CYP3A4 suggest a predominant but not exclusive role for
CYP3A4 in BQ-dealkylation. The CYP1A2 MAB data are consistent with a
minor role for CYP1A2. The CYP3A4 MAB data are more difficult to
interpret because the MAB is not as quantitative in its inhibition.
Relative to BFC, a much smaller portion of activity is catalyzed by
CYP1A2 within HLM. However, it certainly seems that both BFC and BQ are
less selective than testosterone 6
-hydroxylase as a CYP3A4 probe
substrate. Together, these results suggest that CYP3A4 is the major
catalyst involved in the metabolism of BQ within HLM under the
conditions examined here and that BQ may be used to monitor CYP3A
catalytic activity in HLM including inhibition analysis. However,
because there are other P450s that contribute to BQ (and BFC) activity
in HLM, IC50 values obtained in HLM will be
higher than those with expressed CYP3A4.
A total of 247 enzyme substrate pairs were examined and significant level of hepatic P450 isoform selectivity was observed among only four enzyme/substrate pairs. However, there were a number of observations from the initial screen that suggest utility of these fluorescent probes for other applications. For example, it was apparent that MFC may be used as a general substrate for detecting activities of multiple nonCYP3A rat and human P450. Coincubation of MFC and CYP3A-selective BFC may offer a simple, broad coverage assay (yield common 7-hydroxy-4-trifluoromethylcoumarin metabolite) for cytochrome P450 activity in both RLM and HLM and thus be an appropriate test for the quality of a particular tissue for drug metabolism analyses.
We observed that BzRes displayed a striking specificity for human CYP1B1, the only other substantial contributor being CYP1A1, which was found to be ~1/3 less active. This suggests that conditions might be identified (e.g., salt and substrate concentrations) where BzRes is capable of monitoring CYP1B1 activity with good selectivity.
Finally, many substrates were identified that can be used to develop cytochrome P450 inhibition assays with cDNA-expressed enzymes as a source of single enzymes. The key to the development of these assays is not only turnover number but also quantum yield of the metabolite. All enzyme-substrate pairs in Tables 2 and 3 that exhibit a signal/background ratio >3 should be useful in these assays. This value corresponds to approximately 4 times the detection cut-off values listed in footnote "b" of each table. In addition, it may be possible to optimize conditions (e.g., substrate and enzyme concentration, incubation time) to achieve a 3-fold signal/background ratio for other enzyme/substrate pairs not meeting this criteria in the screen.
In this study, we have investigated human and rat P450 isoform catalytic selectivity among a panel of fluorescent substrates. For most substrates, multiple cDNA-expressed cytochrome P450 isoforms were found to catalyze the formation of the fluorescent product. However, among the isoforms tested, rat CYP2D2 and human CYP2D6 displayed complete selectivity with low concentrations of AMMC, and BFC and BQ were relatively selective for CYP3A, with a little activity contributed from CYP1A2 or extrahepatic enzymes. Additional studies using chemical and antibody inhibitors and a correlation analysis within a panel of liver microsomes from individual donors confirmed the relative selectivity of these probe substrates. These substrates are expected to be useful for studies in heterogeneous systems (e.g., liver microsomes) that require a rapid assessment of P450 isoform content or catalytic activity.
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Acknowledgments |
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We thank Dr. Elizabeth Laurenzana of the University of Arkansas for Medical Sciences, Little Rock, Arkansas for providing the liver microsomes from Dark Agouti rats.
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Footnotes |
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Received November 1, 2001; accepted April 11, 2002.
A portion of this work was presented at the 6th International Society for the Study of Xenobiotics meeting; 2001 Oct 7-11; Munich, Germany.
Address correspondence to: David M. Stresser, Gentest, A BD Biosciences Company, 6 Henshaw Street, Woburn, MA 01801. E-mail: David_Stresser{at}bd.com
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Abbreviations |
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Abbreviations used are: P450, cytochrome P450; RLM, rat liver microsomes; HLM, human liver microsomes; SD, Sprague-Dawley; DA, Dark Agouti; DBF, dibenzyl fluorescein; BQ, 7-benzyloxyquinoline; AMMC, 3-[2-(N,N-diethyl-N-methylamino) ethyl]-7-methoxy-4-methylcoumarin; MeAMFC, 3-[2-(N,N-diethyl-N-methylamino) ethyl]-7-methoxy-4-trifluoromethylcoumarin; BFC, 7-benzyloxy-4-trifluoromethylcoumarin; CEC, 7-ethoxy-3-cyanocoumarin; CMC, 7-methoxy-3-cyanocoumarin; MFC, 7-methoxy-4-trifluoromethylcoumarin; BzRes, 7-benzyloxyresorufin; E/S, enzyme-substrate; MAB, monoclonal antibody.
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