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0090-9556/03/3112-1476-1480$20.00
DMD 31:1476-1480, 2003

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A STRATEGY FOR INVESTIGATING THE CYP SUPERFAMILY USING TARGETED ANTIBODIES IS A PARADIGM FOR FUNCTIONAL GENOMIC STUDIES

Robert J. Edwards, Alan R. Boobis, and Donald S. Davies

Section on Clinical Pharmacology, Division of Medicine, Imperial College London, Hammersmith Campus, London, United Kingdom

(Received April 15, 2003; accepted June 25, 2003)


    Abstract
 Top
 Abstract
 Requirement of Antibodies for...
 Anti-P450 Antibodies
 Anti-Peptide Antibodies
 The C-Terminal Approach
 Reliability and Utility of...
 Application to Other Proteins:...
 Limitations of the C-Terminal...
 Conclusions
 References
 
In this review we describe the use of targeted antibodies developed to facilitate studies on the expression of P450 proteins. The challenge of producing specific antibodies that distinguish between often highly related P450 proteins has led to the development of methods of antibody production to meet this need. Targeting antibodies toward the C terminus of P450 proteins has been found to be a particularly successful approach that is both rapid and efficient at producing specifically binding antibodies. Recent advances in genomic sequencing and proteomics now allow ready identification of expressed proteins. The levels and distributions of these proteins may be determined using antibody-based methods. However, for each protein to be studied, a unique antibody will be required. Consequently, some means of producing large numbers of well defined antibodies is needed. In this context, the potential of extending the approach used to produce specific antibodies against P450 proteins to the wider field of functional genomics is discussed.


In 1965 one of us (D.S.D.) joined Dr. Gillette's Section in the Laboratory of Chemical Pharmacology in the National Heart and Lung Institute at Bethesda to study the kinetics of drug oxidation by liver enzymes. At that time, knowledge of drug oxidation was summarized by Jim Gillette thusly: "NADPH participates in the reactions by reducing a component in liver microsomes that reacts with oxygen to form an active oxygen complex which, in turn, hydroxylates the various substrates by a group of nonspecific enzymes". Nevertheless, Gillette recognized the critical role of these nonspecific enzymes in determining sex, species, and interindividual differences in rates of drug metabolism and, therefore, drug action that he documented in a series of authoritative reviews (e.g., Gillette, 1971Go, 1977Go). The recognition of Gillette's "nonspecific enzymes" as the CYP superfamily followed over the next 30 years, but the elucidation of the function of the different members has proved to be a great challenge. In this paper we discuss the use of targeted antibodies in studies of the expression of members of the CYP superfamily. We also discuss the potential that this approach offers for a broader application in proteomic studies.


    Requirement of Antibodies for Proteomic Studies
 Top
 Abstract
 Requirement of Antibodies for...
 Anti-P450 Antibodies
 Anti-Peptide Antibodies
 The C-Terminal Approach
 Reliability and Utility of...
 Application to Other Proteins:...
 Limitations of the C-Terminal...
 Conclusions
 References
 
Recent progress in the sequencing of the entire human genome is a landmark achievement (International Human Genome Sequencing Consortium: Lander et al., 2001Go). On its completion, this initiative will provide a complete catalog of human DNA sequence information. These data are currently being used very productively to develop a variety of technologies, such as micro gene arrays, designed to assess gene expression at the mRNA level. However, there is still a great need to investigate gene expression at the protein level, partly because of the often poor correlation between mRNA and protein expression, but also because ultimately, it is protein function that dictates biological processes.

Progress into the investigation of the role played by individual proteins in biochemical processes and disease would be greatly facilitated if suitable methods could be developed to permit the identification, location, quantification, and functional analysis of individual proteins. Proteomics is providing rapid advances in some of these areas, but there are still serious limitations that could be overcome by producing suitable antibodies. However, it is widely recognized that this is an area in which major developments are required before the effective advancement of proteomic studies will be possible. Conventional approaches to antibody production (either polyclonal or monoclonal) are time consuming and inconsistent with respect to affinity and, particularly, specificity of the product. Antibodies produced against intact proteins, regardless of their source (e.g., purified proteins, recombinant expressed proteins, spots from gels) often cross-react with similar proteins or contaminating proteins present in the original source preparation, considerably reducing their value for use in proteomic studies. Therefore, some means for rapid and simple production of good quality, highly specific antibodies is needed.


    Anti-P450 Antibodies
 Top
 Abstract
 Requirement of Antibodies for...
 Anti-P450 Antibodies
 Anti-Peptide Antibodies
 The C-Terminal Approach
 Reliability and Utility of...
 Application to Other Proteins:...
 Limitations of the C-Terminal...
 Conclusions
 References
 
In many respects, for those of us engaged in studies of the expression of P450 proteins, the problems that need to be overcome to produce useful antibodies are all too familiar. To begin with, purification of P450 proteins from tissues is not a trivial undertaking. Yields are low and purity is often only achieved after some considerable effort. The situation is made particularly difficult for human P450 proteins since the quantities of tissues available are limited and the expression levels may be low. This problem has been addressed by developing heterologous expression systems using a variety of host cells including yeast, mammalian cells, and bacteria (Friedberg et al., 1999Go). To optimize expression levels, it has been found necessary to modify the native P450 protein, most frequently in the hydrophobic N-terminal region that is responsible for anchoring the protein to the endoplasmic reticulum. Their further modification by the addition of a poly-histidine tagging sequence has also been used to facilitate purification using metal-ion chelate chromatography (Modi et al., 1996Go). Although such systems have been successfully applied to the production and purification of a number of human P450 proteins, such work cannot be considered in any way routine nor as an approach that could be applied to produce hundreds or thousands of proteins to be used as immunogens.

Regardless of the way in which the P450 protein is purified, there is still the problem of antibody production. For P450 proteins, simple immunization of an animal to produce a polyclonal antiserum is rarely sufficient. Antisera produced in this way usually cross-react with other P450 proteins present in the tissues of interest. This is due to the high degree of sequence similarity shared by many P450 proteins. One way to overcome this problem is to deplete the antiserum of cross-reacting antibodies by affinity chromatography (Parkinson and Gemzik, 1991Go). But even though successful, this method requires both a knowledge of the proteins to which the antisera cross-react and purified or partially purified preparations of such proteins to adsorb out the undesired antibodies. More frequently, workers have turned to the use of monoclonal antibodies (Gelboin, 1993Go). The use of such antibodies ensures that just a single epitope is recognized. However, this does not necessarily mean that the antibody will bind to a single protein. Again, the conserved nature of P450 proteins means that an identical epitope may be present in other P450 proteins, particularly those that are most closely related in their primary structures (e.g., Wrighton et al., 1992Go; Edwards et al., 1993Go). This problem is overcome by screening out those monoclonal antibodies that bind to other P450 proteins, but again, this requires having suitable preparations to undertake such selection and, of course, this takes time and effort. Common to both polyclonal and monoclonal antibody production is the need to determine that the antibodies not only bind to the desired protein, but are also specific to that protein.


    Anti-Peptide Antibodies
 Top
 Abstract
 Requirement of Antibodies for...
 Anti-P450 Antibodies
 Anti-Peptide Antibodies
 The C-Terminal Approach
 Reliability and Utility of...
 Application to Other Proteins:...
 Limitations of the C-Terminal...
 Conclusions
 References
 
An alternative way to produce antibodies against P450 proteins is to use synthetic peptides that represent small regions of the protein of interest as immunogens. This approach requires no protein purification to prepare the target P450 and other related forms; instead, it simply requires knowledge of the sequence of these proteins. From this information it is possible to predetermine the region of the P450 protein to which the antibody will bind. Selection of regions that vary between related forms will ensure that the antibodies will be form-specific (Edwards et al., 1991Go). It is also possible to target regions that may be involved in catalysis and in this way inhibit the activity of the enzyme (e.g., Adams et al., 1997Go). The selected peptides are synthesized and chemically coupled to a carrier protein, and then animals are immunized with the conjugate. The resultant antisera can be used directly without further processing. In this way it is possible to produce epitope-specific polyclonal antibodies. We have successfully applied this approach to the production of panels of antibodies against human and rodent P450 proteins (Edwards, 1998Go; Edwards et al., 1998Go). From our investigations into P450 proteins it is evident that the same approach holds great potential for the generation of the large number of antibodies required to match the successful application of proteomic techniques in identifying potentially important proteins.


    The C-Terminal Approach
 Top
 Abstract
 Requirement of Antibodies for...
 Anti-P450 Antibodies
 Anti-Peptide Antibodies
 The C-Terminal Approach
 Reliability and Utility of...
 Application to Other Proteins:...
 Limitations of the C-Terminal...
 Conclusions
 References
 
Although anti-peptide antibodies have been applied to studies involving a wide range of proteins, it is often perceived that this approach is overcomplicated by questions of the selection of peptide (based on the probable location within the protein and the optimum size of the peptide), the success rate in producing antibodies that bind to the target protein, and the resultant specificity of the antibodies. Hence, in different hands, success in the use of anti-peptide antibodies has been variable. However, if the aim is simply to produce an antibody against a particular protein, then it is possible to circumvent such problems.

We have devised a simple, effective and reliable approach to the targeting of P450 proteins. We have exploited their extreme C terminus (i.e., typically, the terminal four or five residues) as a target for antibody production (Edwards, 1998Go; Edwards et al., 1998Go). To do this, each peptide is coupled through its N terminus to a carrier protein to mimic the presentation of the C terminus of the target protein. This method was adopted following the finding that a large proportion of antibodies raised against a peptide conjugated to a carrier protein through its N terminus are directed toward an epitope that comprises the extreme C-terminal residues and, importantly, includes the carboxyl group of the C-terminal residue itself (Edwards et al., 1995Go). Antibody binding to the free C-terminal carboxyl group is critical for determining specificity, since this restricts the binding of such antibodies to the C terminus of protein antigens. Therefore, although the combination of amino acids that comprise the epitope may occur in a number of proteins, such antibodies will bind only to those proteins that contain the epitope at their C terminus, and this is rare. This assertion is based on both structural and practical observations. Structural uniqueness (or otherwise) can be ascertained for each epitope targeted by examining the C termini of proteins in appropriate databases (e.g., SWISS-PROT, EMBL, PIR, etc.). But, from a practical point of view, selectivity in the binding of such antibodies is evident from analysis of samples by Western blotting. The antibodies show remarkable specificity in binding to the target P450 in liver microsomal fraction or even crude liver homogenate samples with little evidence of binding to other liver proteins (Fig. 1), despite the large number that are present at readily detectable levels.



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FIG. 1. Specificity of binding of C-terminal directed anti-peptide antibodies.

Samples of human liver were separated by SDS-polyacrylamide gel electrophoresis using 9% gels containing the following: lane S, reference standard (5 µg), comprising a pool of human liver microsomal fraction from six previously characterized donors; lanes 1, 3, and 5, liver homogenate from three different donors (50 µg); and lanes 2, 4, and 6, liver microsomal fraction from the same respective donors (5 µg). The immunoblots were developed with either anti-Val-Ile-Pro-Arg-Ser antiserum to detect CYP2E1 or anti-Thr-Val-Ser-Gly-Ala antiserum to detect CYP3A4 as described previously (Edwards et al., 1998Go). Note that in each of the blots, in both the microsomal fraction and the homogenate samples, no bands other than the target P450 are detected.

 

In our experience with antibodies targeted against the C terminus of P450 proteins, the only proteins with C termini that are similar enough to allow antibody binding are other P450 proteins that are members of the same family or subfamily. This is the case for the human forms of the CYP2C subfamily, which all have identical C termini. Thus, the antibody targeted against the C terminus binds to all forms (Table 1). Obviously, this antibody is limited in its specificity. However, since CYP2C18 is expressed at only a very low level in human liver, and CYP2C8, CYP2C9, and CYP2C19 can be separated by SDS-polyacrylamide gel electrophoresis (Goldstein et al., 1994Go), then it is still possible to determine levels of each P450. In fact, since the epitope is identical in all of the CYP2C forms, it is possible to compare levels between these forms and quantify them using a single standard. The C termini of CYP3A4 and CYP3A7 are also identical, and so the antibody targeted against this region recognizes both forms (Table 1); but since CYP3A7 expression is largely limited to fetal tissue,2 this does not normally pose any major practical problems. The C terminus of CYP2A6 varies from that of CYP2B6 in just one residue, with the four C-terminal residues being identical. This appears to be sufficient to allow the antibody to bind to both forms (Table 1). However, the variation in the C termini of the other seven forms of human P450 studied is such that all other antibodies bound to just a single P450 and to no other proteins in human liver microsomal fraction (Table 1).


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TABLE 1 Human P450 proteins that have been targeted with antibodies against their C termini and the specificity of such antibodies The reactivity of these antibodies has been described previously (Edwards et al., 1998Go).

 

In the rat, among those examined, only CYP2B1 and CYP2B2 have identical C termini, and the antibody against the C-terminal peptide bound to both forms equally (Table 2). There is a close similarity between the C termini of CYP2D1 and CYP2D5 with only one difference occurring in the terminal amino acid. Antibodies raised against five-residue peptides, representing the C termini of each form, showed strong reactivity with the target form and weak reactivity to the other form. To direct the antibodies more toward the terminal residues, the peptides used for immunization were reduced in size to 3-amino acids. This was successful in improving the selectivity of the binding of the antibodies with only the respective target forms being detected (Table 2). In all, 10 antibodies were produced against the C termini of rat P450 proteins that bound to single forms of P450 and to no other proteins in rat liver microsomal fraction (Table 2).


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TABLE 2 Rat P450 proteins that have been targeted with antibodies against their C termini and the specificity of such antibodies The table summarizes data from several studies (Debri et al., 1995Go; Edwards, 1998Go; Schulz-Utermoehl et al., 1999Go) and includes some previously unpublished data.

 

Therefore, in the majority of cases the antibodies bound to only the targeted protein, and where binding to other proteins was found, this was to a highly related protein.

The binding of such antibodies is strongly affected by small alterations of the C-terminal region. Often the antibodies do not bind to related protein antigens that differ by just a single amino acid in the C terminus. However, the precise structural determinants of the specificity of such antibodies, including the size and composition of the epitope, have yet to be fully determined, and we intend to explore this further in future work. Unlike most antibodies, this is possible here since the epitopes are composed of contiguous amino acids, and this should permit the epitopes to be defined using a systematic approach.

Such is the structural relationship between P450 proteins that the C termini of some proteins are conserved between species. Consequently, a single antibody may bind equally to the same form of P450 from a variety of species. This is the case for CYP2E1, where the C terminus (Val-Ile-Pro-Arg-Ser) is the same in human and rat (Tables 1 and 2), and also mouse, hamster, rabbit, and cynomolgus monkey. Interestingly, the C terminus of marmoset monkey CYP2E1 is extended by two residues (Val-Ile-Pro-Arg-Ser-Ser-Val) and as a result is not detected at all by immunoblotting using the anti-Val-Ile-Pro-Arg-Ser antibody (Schulz et al., 1998Go). This illustrates one importance aspect of the properties of such antibodies, i.e., that antibody binding is not reliant on just the occurrence of a combination of amino acids, but also on their location at the C terminus.


    Reliability and Utility of the Approach
 Top
 Abstract
 Requirement of Antibodies for...
 Anti-P450 Antibodies
 Anti-Peptide Antibodies
 The C-Terminal Approach
 Reliability and Utility of...
 Application to Other Proteins:...
 Limitations of the C-Terminal...
 Conclusions
 References
 
Overall, we have immunized a total of 38 rabbits with different peptides that represent the C termini of various P450 enzymes, as well as some other proteins (see below). In every case to date, antibodies were produced that bound to the target protein (e.g., Edwards, 1998Go; Edwards et al., 1998Go, and references therein); thus, the approach is highly reliable. The antibodies bound equally well to native and denatured proteins, showing that access of the antibodies to the C terminus is not compromised by structural constraints. This was expected since the extreme C terminus of a protein is usually highly flexible and exposed as shown by X-ray crystallographic studies of many proteins including P450 proteins (Thornton and Sibanda, 1983Go; Poulos et al., 1987Go; Williams et al., 2000Go), making it readily available for antibody binding. Antibodies produced in this way have been used extensively in Western blotting and immunohistochemistry studies, and the results have provided information on the expression and locations of many P450 proteins in liver, lung, intestine, and brain (Debri et al., 1995Go; Riedl et al., 1996Go, 1999Go; Anttila et al., 1997Go; Raunio et al., 1999Go; Piipari et al., 2000Go).


    Application to Other Proteins: A General Approach?
 Top
 Abstract
 Requirement of Antibodies for...
 Anti-P450 Antibodies
 Anti-Peptide Antibodies
 The C-Terminal Approach
 Reliability and Utility of...
 Application to Other Proteins:...
 Limitations of the C-Terminal...
 Conclusions
 References
 
The ability of C-terminally directed antibodies to bind strongly and specifically to target proteins is not a consequence of any unique antigenic property of P450 enzymes. During the course of our work we have produced antibodies against a number of other proteins, in the same way as described above, as required for various projects. These have included yeast glucose-6-phosphate dehydrogenase (Edwards et al., 1995Go), glutathione S-transferase-{theta} (Schulz et al., 2000Go), cytochrome P450 reductase, CCR-5 receptor, and guanine nucleotide-binding protein Gs {alpha} subunit (unpublished data). Whatever the target protein, once identified, polyclonal anti-peptide antibodies can be produced relatively rapidly (i.e., within 7-8 weeks, including the time needed to synthesize the peptide, couple it to carrier protein, and immunize animals), and our experience has been that the specificity of such antibodies is generally predictable from a knowledge of the sequence of structurally similar proteins. In theory, this approach can be used to develop antibodies against most proteins. All that would be needed is knowledge of the structure of the C terminus of the protein. Once the entire human proteome is known, the approach can be readily applied to the production of antibodies against human proteins. Since the precise epitope would be known, once the determinants of specificity have been established, it will be possible to define the specificity of the antibody for the entire proteome, simply by sequence scanning. Hence, this method of antibody production would provide a major advance over current methods.


    Limitations of the C-Terminal Approach
 Top
 Abstract
 Requirement of Antibodies for...
 Anti-P450 Antibodies
 Anti-Peptide Antibodies
 The C-Terminal Approach
 Reliability and Utility of...
 Application to Other Proteins:...
 Limitations of the C-Terminal...
 Conclusions
 References
 
Our work with the CYP superfamily of proteins has provided a rigorous test for this approach to antibody production and has illustrated some of its limitations. The clearest and most obvious example of this is the inability to distinguish between proteins with identical C termini. However, it has also been notable from the examination of protein sequences that this is only likely to occur to any great extent between highly related proteins. In these cases the antibodies might be considered to target groups or (sub)families of proteins, and such antibodies might still be useful for preliminary screening. Even when, by coincidence, unrelated proteins have similar or identical C termini, it should be noted that such reactions might be predictable from sequence scanning.

For some proteins the approach is not suitable. Clearly, antibodies cannot be produced against proteins if the structure of the C terminus is unknown. This will become increasingly unlikely in the future as sequence work on numerous species continues apace. However, for proteins where the C terminus is inaccessible due to post-translational modification, the approach cannot be applied directly because the epitope is masked.

In all of these cases it is still possible to produce anti-peptide antibodies to regions other than the C terminus that bind specifically. For P450 proteins we have been able to produce specific antibodies against many of the forms with identical C termini, including some of those discussed above, i.e., CYP2A6 and CYP2B6 (Edwards et al., 1998Go), and CYP3A4 and CYP3A7 (unpublished data). We have found particular success in targeting predicted loop regions using cyclic peptides as immunogens (e.g., Schulz-Utermoehl et al., 2000Go). This approach, although it requires some consideration of the regions to target, and even though it is somewhat less reliable than the C-terminal approach, is still a powerful means of producing specific antibodies and is a very useful adjunct to the C-terminal approach. Such antibodies can also be targeted toward regions important for enzyme activity and cause inhibition (e.g., Schulz-Utermoehl et al., 2000Go). C-terminally directed antibodies do not inhibit the activity of P450 enzymes.

For potential applications in proteomics, particularly in expression profiling, there is the need to produce extensive libraries of hundreds or possibly thousands of antibodies. Since the production of such quantities of polyclonal antibodies appears to be a rather daunting prospect, perhaps recombinant antibody technology can be applied. The use of recombinant libraries of single-chain variable region antibodies (Winter et al., 1994Go) has advanced the speed of antibody production by overcoming the need to immunize animals. Since the recombinant antibody approach is adaptable to automation and, hence, the production of large numbers of antibodies (de Wildt et al., 2000Go), it might be possible to produce large numbers of highly specific antibodies against defined C-terminal epitopes in this way.


    Conclusions
 Top
 Abstract
 Requirement of Antibodies for...
 Anti-P450 Antibodies
 Anti-Peptide Antibodies
 The C-Terminal Approach
 Reliability and Utility of...
 Application to Other Proteins:...
 Limitations of the C-Terminal...
 Conclusions
 References
 
The challenge of producing specific antibodies that distinguish between often highly related P450 proteins has lead us to develop methods of antibody production to meet this need. We have found particular success in targeting the C terminus of P450 proteins. This approach was found to be both rapid and efficient at producing specifically binding antibodies. Furthermore, the binding of such antibodies to related proteins is potentially predictable. It is possible that this work can be extended more widely to the field of functional genomics. The human genome contains 30,000 to 40,000 protein-expressing genes (Lander et al., 2001Go), and methods are now needed to determine the levels and distribution of the expressed proteins. The approach discussed here is capable of producing antibodies that bind to the majority of these proteins and, in theory, with a great deal of specificity.

When Dr. Gillette and colleagues organized the first meeting on "Microsomes and Drug Oxidations" in Bethesda in 1968 (Gillette et al., 1969Go), they could not have imagined the complexity of the P450 system. The approach described is helping us to better understand the critical functions of this fascinating group of enzymes.


    Footnotes
 

Donald Davies received a Bachelor's degree in chemistry in 1962 from the University of Wales (UK). In 1965 he received a Ph.D. degree in biochemistry from St. Mary's Hospital Medical School, University of London under the supervision of Professor Tecwyn Williams for studies of drug metabolism.

From 1965 to 1967 Professor Davies was a Visiting Fellow in the Laboratory of Chemical Pharmacology at the National Institutes of Health (United States) where he was a member of Dr. Gillette's Section working on mechanisms of drug oxidation in the very early days of research on P450. In 1967 he returned to the UK to join the Department of Clinical Pharmacology at the Royal Postgraduate Medical School (London, UK) and was appointed Professor of Biochemical Pharmacology in 1980. In 1987 he succeeded Professor Colin Dollery as head of the department (at what is now Imperial College London). Recently, he resigned from this post to become Director of Research at ML Laboratories plc but continues to be a member of the professorial staff at Imperial College London. A major element in his research on mechanisms of drug action and toxicity has been his studies of human P450 enzymes, an interest he developed while working with Dr. Gillette.


Alan Boobis received a Bachelor's degree in pharmacology in 1971 from the University of Glasgow (UK). In 1974 he received a Ph.D. degree in pharmacology from the University of Glasgow (UK) under the supervision of Garth Powis working in the area of drug metabolism. His doctoral work involved studies of the influence of changes in hemodynamics in the liver on drug disposition and the effects of lipid peroxidation on P450 integrity. In 2003, he received an OBE for his work on the risk assessment of pesticides.

Professor Boobis then worked as a Fogarty Visiting Fellow for two years with Dr. Dan Nebert at the National Institutes of Health (Bethesda, MD). During this time he studied the effects of modulating factors on benzo-[a[pyrene DNA adduction and was also involved in an investigation of genetic and developmental factors on P450 expression and activity. In 1976 he joined the department of Clinical Pharmacology at what was then the Royal Postgraduate Medical School (London, UK), as a Medical Research Council research training fellow under the supervision of Professor Donald Davies. He was then appointed to a tenured lectureship and subsequently promoted to Professor of Biochemical Pharmacology, his current position (at what is now Imperial College London). Recently, he also took over as director of the Department of Health Toxicology Unit at Imperial College London. His current research interests include the regulation of human P450 enzymes by genetic and environmental factors and the development of novel biomarkers of toxicity.


Robert Edwards received a Bachelor's degree in applied biochemistry in 1977 from Brunel University (UK). In 1982 he received a Ph.D. degree in biochemistry from Guy's Hospital Medical School, University of London. In 1984 he joined the Department of Clinical Pharmacology at the Royal Postgraduate Medical School (London, UK) to work with Alan Boobis and Donald Davies on the characterization of P450 enzymes. Here, he developed an anti-peptide approach for the production of antibodies against the major forms of hepatic P450 expressed in human and other species. In 2000 he was appointed as Research Lecturer at Imperial College London. His current research activities include the application of the anti-peptide antibody approach to proteomics as well as a continuing interest in the characterization of P450 enzymes by immunochemical methods.

1 Abbreviation used is: P450, cytochrome P450. Back

2 We have also produced a CYP3A7-specific antibody by targeting an internal sequence of CYP3A7. This antibody has been used to examine the expression of CYP3A7 in the liver of 59 normal human donors by immunoblotting. In 58 of these, no evidence of expression was found. In one sample an immunoreactive protein was present, but we have yet to confirm whether this is CYP3A7 (unpublished data). Thus, although CYP3A7 mRNA is expressed at detectable levels in the majority of adult livers (Schuetz et al. 1994Go; Burk et al. 2002Go), this does not appear to be the case for CYP3A7 protein. Back

Address correspondence to: Dr. Robert J. Edwards, Section on Clinical Pharmacology, Division of Medicine, Imperial College London, Hammersmith Campus, Du Cane Road, London W12 0NN, UK. E-mail: r.edwards{at}imperial.ac.uk


    References
 Top
 Abstract
 Requirement of Antibodies for...
 Anti-P450 Antibodies
 Anti-Peptide Antibodies
 The C-Terminal Approach
 Reliability and Utility of...
 Application to Other Proteins:...
 Limitations of the C-Terminal...
 Conclusions
 References
 


Adams DA, Edwards RJ, Davies DS, and Boobis AR (1997) Specific inhibition of human CYP1A2 using a targeted antibody. Biochem Pharmacol 54: 189-197.[CrossRef][Medline]

Anttila S, Hukkanen J, Hakkola J, Stjernvall T, Beaune P, Edwards RJ, Boobis AR, Pelkonen O, and Raunio H (1997) Expression and localization of CYP3A4 and CYP3A5 in human lung. Am J Respir Cell Mol Biol 16: 242-249.[Abstract]

Burk O, Tegude H, Koch I, Hustert E, Wolbold R, Glaeser H, Klein K, Fromm MF, Nuessler, AK, Neuhaus P, et al. (2002) Molecular mechanisms of polymorphic CYP3A7 expression in adult human liver and intestine. J Biol Chem 277: 24280-24288.[Abstract/Free Full Text]

Debri K, Boobis AR, Davies DS, and Edwards RJ (1995) Distribution and induction of CYP3A1 and CYP3A2 in rat liver and extrahepatic tissues. Biochem Pharmacol 50: 2047-2056.[CrossRef][Medline]

de Wildt RM, Mundy CR, Gorick BD, and Tomlinson IM (2000) Antibody arrays for high-throughput screening of antibody-antigen interactions. Nat Biotechnol 18: 989-994.[CrossRef][Medline]

Edwards RJ (1998) Targeting antipeptide antibodies towards cytochrome P450 enzymes, in Cytochrome P450 Protocols (Phillips IR and Shephard EA eds) pp 239-249, Humana Press, Totowa, NJ.

Edwards RJ, Adams DA, Watts PS, Davies DS, and Boobis AR (1998) Development of a comprehensive panel of antibodies against the major xenobiotic metabolising forms of cytochrome P450 in humans. Biochem Pharmacol 56: 377-387.[CrossRef][Medline]

Edwards RJ, Murray BP, and Boobis AR (1991) Antipeptide antibodies in studies of cytochromes P450IA. Methods Enzymol 206: 220-233.[Medline]

Edwards RJ, Murray BP, Murray S, Singleton AM, Davies DS, and Boobis AR (1993) An inhibitory monoclonal anti-protein antibody and an anti-peptide antibody share an epitope on rat cytochrome P-450 enzymes CYP1A1 and CYP1A2. Biochim Biophys Acta 1161: 38-46.[CrossRef][Medline]

Edwards RJ, Singleton AM, Murray BP, Davies DS, and Boobis AR (1995) Short synthetic peptides exploited for reliable and specific targeting of antibodies to the C-termini of cytochrome P450 enzymes. Biochem Pharmacol 49: 39-47.[CrossRef][Medline]

Friedberg T, Pritchard MP, Bandera M, Hanlon SP, Yao D, McLaughlin LA, Ding S, Burchell B, and Wolf CR (1999) Merits and limitations of recombinant models for the study of human P450-mediated drug metabolism and toxicity: an intralaboratory comparison. Drug Metab Rev 31: 523-544.[CrossRef][Medline]

Gelboin HV (1993) Cytochrome P450 and monoclonal antibodies. Pharmacol Rev 45: 413-453.[Medline]

Gillette JR (1971) Factors affecting drug metabolism. Ann NY Acad Sci 179: 43-66.[CrossRef][Medline]

Gillette JR (1977) The phenomenon of species variations: problems and opportunities, in Drug Metabolism from Microbe to Man (Parke DV and Smith RL eds) pp 147-168, Taylor and Francis, London.

Gillette JR, Conney AH, Cosmides GJ, Estabrook RW, Fouts JR, and Mannering GJ (1969) Microsomes and Drug Oxidations, Academic Press, New York.

Goldstein JA, Faletto MB, Romkes-Sparks M, Sullivan T, Kitareewan S, Raucy JL, Lasker JM, and Ghanayem BI (1994) Evidence that CYP2C19 is the major (S)-mephenytoin 4'-hydroxylase in humans. Biochemistry 33: 1743-1752.[CrossRef][Medline]

Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, et al. (2001) Initial sequencing and analysis of the human genome. Nature (Lond) 409: 860-921.[CrossRef][Medline]

Modi S, Paine MJ, Sutcliffe MJ, Lian LY, Primrose WU, Wolf CR, and Roberts GC (1996) A model for human cytochrome P450 2D6 based on homology modeling and NMR studies of substrate binding. Biochemistry 35: 4540-4550.[CrossRef][Medline]

Parkinson A and Gemzik B (1991) Production and purification of antibodies against rat liver P450 enzymes. Methods Enzymol 206: 233-245.[Medline]

Piipari R, Savela K, Nurminen T, Hukkanen J, Raunio H, Hakkola J, Mantyla T, Beaune P, Edwards RJ, Boobis AR, and Anttila S (2000) Expression of CYP1A1, CYP1B1 and CYP3A and polycyclic aromatic hydrocarbon-DNA adduct formation in bronchoalveolar macrophages of smokers and non-smokers. Int J Cancer 86: 610-616.[CrossRef][Medline]

Poulos TL, Finzel BC, and Howard AJ (1987) High-resolution crystal structure of cytochrome P450cam. J Mol Biol 195: 687-700.[CrossRef][Medline]

Raunio H, Hakkola J, Hukkanen J, Lassila A, Paivarinta K, Pelkonin O, Anttila S, Piipari R, Boobis A, and Edwards RJ (1999) Expression of xenobiotic-metabolizing CYPs in human pulmonary tissue. Exp Toxicol Pathol 51: 412-417.[Medline]

Riedl AG, Watts PM, Edwards RJ, Boobis AR, Jenner P, and Marsden CD (1996) Selective localisation of P450 enzymes and NADPH-P450 oxidoreductase in rat basal ganglia using anti-peptide antisera. Brain Res 743: 324-328.[CrossRef][Medline]

Riedl AG, Watts PM, Edwards RJ, Schulz-Utermoehl T, Boobis AR, Jenner P, and Marsden CD (1999) Expression and localisation of CYP2D enzymes in rat basal ganglia. Brain Res 822: 175-191.[CrossRef][Medline]

Schuetz JD, Beach DL, and Guzelian PS (1994) Selective expression of cytochrome P450 CYP3A mRNAs in embryonic and adult human liver. Pharmacogenetics 4: 11-20.[Medline]

Schulz TG, Thiel R, Davies DS, and Edwards RJ (1998) Identification of CYP2E1 in marmoset monkey. Biochim Biophys Acta 1382: 287-294.[CrossRef][Medline]

Schulz TG, Wiebel FA, Thier R, Neubert D, Davies DS, and Edwards RJ (2000) Identification of theta-class glutathione S-transferase in liver cytosol of the marmoset monkey. Arch Toxicol 74: 133-138.[CrossRef][Medline]

Schulz-Utermoehl T, Bennett AJ, Ellis SW, Tucker GT, Boobis AR, and Edwards RJ (1999) Polymorphic debrisoquine 4-hydroxylase activity in the rat is due to differences in CYP2D2 expression. Pharmacogenetics 9: 357-366.[Medline]

Schulz-Utermoehl T, Edwards RJ, and Boobis AR (2000) Affinity and potency of proinhibitory antipeptide antibodies against CYP2D6 is enhanced using cyclic peptides as immunogens. Drug Metab Dispos 28: 544-551.[Abstract/Free Full Text]

Thornton JM and Sibanda BL (1983) Amino and carboxy-terminal regions in globular proteins. J Mol Biol 167: 443-460.[CrossRef][Medline]

Williams PA, Cosme J, Sridhar V, Johnson EF, and McRee DE (2000) Mammalian microsomal cytochrome P450 monooxygenase: structural adaptations for membrane binding and functional diversity. Mol Cell 5: 121-131.[CrossRef][Medline]

Winter G, Griffiths AD, Hawkins RE, and Hoogenboom HR (1994) Making antibodies by phage display technology. Annu Rev Immunol 12: 433-455.[Medline]

Wrighton SA, Vandenbranden M, Becker GW, Black SD, and Thomas PE (1992) Two monoclonal antibodies recognizing different epitopes on rat cytochrome IIB1 react with human IIE1. Mol Pharmacol 41: 76-82.[Abstract]



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