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Department of Pharmaceutics, University of Washington, Seattle, Washington (L.A.M., D.D.S., R.J.Y.H.), Fred Hutchinson Cancer Research Center, Seattle, Washington (B.P., D.D.S., R.J.Y.H.); and Amgen Inc, Thousand Oaks, California (M.B.)
(Received March 13, 2003; accepted May 16, 2003)
| Abstract |
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Although measurement of CYP2D6 mRNA in lymphocytes could serve as a
quantitative biomarker, it is not clear whether this enzyme is actually
expressed and functional in human lymphocytes. Studies with other
P4501 isozymes, namely
CYP1A1 and CYP2E1, have investigated the utility of lymphocytes as biomarkers
for enzymes expressed primarily in the liver
(Vanden Heuvel et al., 1993
;
Raucy et al., 1997
;
Dey et al., 2001
). For each of
these isoforms, investigators have shown measurable mRNA levels and, for 1A1,
catalytic activity in lymphocytes. Furthermore, these investigators have
concluded that lymphocyte measures of mRNA and enzyme activity, in the case of
1A1, are related to in vitro hepatic activity. There are no reported studies
validating the use of CYP2D6 mRNA expression in lymphocytes as an indicator of
hepatic function. Furthermore, reports of CYP2D6 mRNA expression in
lymphocytes have relied on the detection of small fragments of CYP2D6 message
(<300 bp); these data may not reflect the full transcript necessary for
producing a functional enzyme.
Therefore, we sought to characterize the expression of CYP2D6 mRNA transcript and enzyme activity in human lymphocytes. We found that lymphocytes express truncated CYP2D6 mRNA transcripts and lack functional CYP2D6 enzyme when assessed with the traditional marker, dextromethorphan, and a new, highly sensitive substrate probe.
| Materials and Methods |
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Dextromethorphan O-demethylation was determined with in vitro incubations containing 12 µM dextromethorphan and up to 5 mg/ml total lymphocyte protein in 0.5 ml of incubate. Samples were preincubated for 5 min in a shaking 37°C water bath. Reactions were initiated with the addition of 1 mM NADPH and terminated by the addition of 2 ml of acetonitrile, and immediately placed on ice. Incubation times varied from 0 to 45 min. After reaction termination, internal standard (butorphanol) was added followed by centrifugation to remove protein. After evaporating the acetonitrile under a gentle stream of air and filtering remaining sample with a 0.22-µm nylon filter fitted to a 1.5-ml Eppendorf-type centrifuge tube (Costar, Cambridge MA), the samples were analyzed by liquid chromatography-mass spectrometry (LC/MS).
O-Demethylated product of dextromethorphan was analyzed by liquid chromatography/mass spectrometry (LC/MS). Chromatographic separation of dextrorphan and butorphanol was accomplished with a Zorbax C-18 column and mobile phase consisting of 70% 10 mM ammonium acetate (pH 4.0) and 30% acetonitrile at a flow rate of 0.2 ml/min. The retention times were approximately 4.4 min for dextrorphan and 8.3 min for butorphanol. The mass spectrometer, Agilent model G1946B, was operated in the positive ion electrospray mode, monitoring mass ions at m/z ratios of 258 and 328 that correspond to the respective MH+ of dextrorphan and butorphanol.
In Vitro CYP2D6 Activity Determination with R-568. Homogenates of
human lymphocytes were prepared as described above. All in vitro incubations
were conducted in polypropylene tubes in a total volume of 0.5 ml. R-568 is a
first-generation calcimimetic (Cohen and
Silverberg, 2002
), which has been shown to be a specific and
high-turnover substrate of CYP2D6 (L. McConnachie, K. Kowdley, A. Levy, B.
Tung, K. Thummel, B. Phillips, M. Bajpai, V. Chi, J. Esmay, D. Shen, R. Ho,
manuscript submitted for publication). It has an in vitro intrinsic clearance
that is manyfold higher than those of all the available CYP2D6 markers. Parent
compound (R-568) and its O-desmethyl metabolite (M1) were kindly
supplied by Amgen Inc. Incubations were conducted in a buffer composed of 100
mM KPi and 1 mM EDTA (J. T. Baker, Phillipsburg, NJ). Protein and
substrate were preincubated for 5 min in a 37°C shaking water bath, and
reactions were initiated by the addition of 1 mM (final concentration) NADPH
(Sigma-Aldrich, St. Louis MO). The conditions of various incubation
experiments are presented in Table
1. In addition to incubating lymphocyte homogenates with R-568, we
supplemented these same mixtures with purified human cytochrome
b5 (PanVera Corp., Madison WI) and NADPH-P450 reductase
(BD Gentest, Woburn, MA), and purified recombinant human CYP2D6 (BD Gentest).
In experiments in which cytochrome b5 and reductase were
included, there was an additional preincubation period of 15 min.
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Reactions were terminated by the addition of 2.0 ml of ice-cold methyl tert-butyl ether (Fisher Scientific, Fair Lawn, NJ), followed by 20 µl of methanol containing 5 ng of capsaicin (Sigma-Aldrich) as the internal standard. The samples were agitated in a horizontal shaker for 10 min and centrifuged at 2000 rpm for 10 min to separate the organic and aqueous phases. The organic layer was removed to a glass tube and evaporated to dryness under a gentle stream of air. The extract was reconstituted in 100 µl of mobile phase (60% 10 mM ammonium acetate, pH 4.0, 40% acetonitrile) and transferred to injection vials for analysis by LC/MS.
Chromatography was performed with a YMC Basic C-8 column (100 x 2.1 mm; YMC Inc. USA, Milford, MA) as described above. The flow rate of mobile phase was 0.2 ml/min for 5.5 min and 0.3 ml/min for the next 4.5 min, for a total run time of 10 min per sample. The mass spectrometer was operated in the positive ion electrospray mode. The ions monitored and their associated retention times were as follows: R-568 metabolite M1, m/z 290, retention time 2.9 min; R-568 (parent), m/z 304, retention time 4.6 min; capsaicin (internal standard), m/z 306, retention time 8.7 min. On-column limits of quantitation of both R-568 and M1 (parent and metabolite compounds, respectively) were 15 fg per injection.
Northern Blot Analysis to Detect the CYP2D6 RNA Transcript. A full-length CYP2D6 cDNA transcript was used as the probe to detect CYP2D6 mRNA on the blot. The cDNA transcript was prepared from a plasmid containing the human full-length CYP2D6 cDNA kindly provided to us by Dr. Frank Gonzalez (National Institutes of Health, Bethesda, MD). This probe was biotinylated with the use of the BioNick labeling system (Invitrogen, Carlsbad CA) according to the manufacturer's instructions. In brief, 1 µg of CYP2D6 cDNA was mixed with the deoxynucleoside-5'-triphosphate mix (containing biotin-14-dATP) and enzyme (Escherichia coli DNA polymerase I) and incubated at 16°C for 1 h. The resulting biotinylated probe was purified by precipitation from the reaction mixture with ethanol.
Total RNA was extracted from human donor lymphocytes obtained from the Puget Sound Blood Center and a liver obtained from the University of Washington Human Liver Bank. Both donors were homozygous wild-type for CYP2D6 genotype. RNA extraction from these tissues was accomplished with the use of the Ambion Totally RNA kit (Ambion, Austin, TX).
Diluted aliquots of total RNA (424 µg of lymphocyte RNA and
520 µg of liver RNA) were electrophoresed in a 1.0% agarose gel
containing 2.2 M formaldehyde at 4 V/cm
(Sambrook et al., 1989
). We
also included a lane containing the full-length CYP2D6 mRNA transcript as a
positive control. NorthernMax running buffer (Ambion) was used for gel
preparation and electrophoresis.
Following electrophoresis, RNAs were transferred to a Biodyne A membrane (Invitrogen) overnight. The nucleic acids were subsequently crosslinked to the membrane by baking at 80°C for 2 h.
To hybridize the biotinylated CYP2D6 probe to the immobilized RNA, we first conditioned the membrane with UltraHyb hybridization buffer (Ambion) for 30 min at 42°C in a hybridization bag. Two hundred picograms of the double-stranded biotinylated probe were denatured and added to the hybridization bag. This was left to hybridize overnight at 42°C with moderate shaking. Unbound probe was then removed with successive washes with standard saline citrate buffer containing SDS.
The probe was detected with the use of the Phototope-Star detection kit (New England Biolabs, Beverly MA), a chemiluminescence-based detection system, according to the manufacturer's instructions. The blot was visualized following exposure to X-ray film.
Detection of the Full-Length or Complete CYP2D6 mRNA Transcript with
RT-PCR. To detect CYP2D6 mRNA, we relied on a RT-PCR assay with a very
high degree of sensitivity. The detection limit of this assay is approximately
500 copies of the full-length CYP2D6 transcript. This assay is similar to
previously published methods from our laboratory
(Wang et al., 2000
;
Yang et al., 2002
). Total
lymphocyte RNA was extracted from human donors provided by the Puget Sound
Blood Center. RNA extraction was accomplished with the use of the Ambion
Totally RNA kit (Ambion) and quantitated spectrophotometrically. In every
experiment, both positive and negative controls were included to validate
results from the RT-PCR assay. Negative controls contained no RNA template,
whereas positive controls contained human liver total RNA from a
CYP2D6-positive liver.
RT-PCR was performed using the Titan One-Tube RT-PCR System (Roche Diagnostics, Indianapolis IN). In brief, 0 to 1 µg of total RNA from lymphocytes was mixed with a 200 µM concentration of each deoxynucleoside-5'-triphosphate, 2.5 µl of dithiothreitol, 1 µl of the enzyme mix (avian myeloblastosis virus reverse transcriptase, Taq and Tgo DNA polymerases), 0.4 µM concentration of each primer, 6 units of RNase inhibitor, 10 µl of 5x RT-PCR buffer, and sterile nuclease-free H2O to a final volume of 50 µl. The primers, of novel design, were as follows: forward 5'-AGT GGC CAT CTT GCT CC, and reverse 5'-CGG GGC ACA GCA CAA AGC. These primers amplified the entire CYP2D6 mRNA transcript and resulted in a 1.5-kb product.
Reactions were carried out in the PerkinElmer model 2400 Thermocycler (Applied Biosystems, Foster City CA) using standard thin-walled reaction tubes. The first step, reverse transcription, was performed for 45 min at 47°C. This was immediately followed by denaturation at 94°C for 2 min, followed by 10 cycles at 94°C for 30 s, 59°C for 30 s, and 68°C for 1.5 min, and 25 additional cycles at a 62°C (instead of 59°C) annealing temperature and an incremental increase of 5-s extension time per cycle. The final extension was performed at 68°C for 7 min.
Following separation of products by electrophoresis on a 2.0% agarose gel, formation of the CYP2D6 product was quantified based on the digitized band intensity of the fluorescence image of the agarose gel stained with ethidium bromide.
Detection of a Truncated CYP2D6 mRNA Transcript and ß-Actin with RT-PCR. To detect a truncated CYP2D6 mRNA transcript, we again utilized the Titan One-Tube RT-PCR system as described above. The primers for this reaction were as follows: forward 5'-TGT TCC TGG CGC GCT AT, and reverse 5'-CTC CTC GGT CAC CCA. These primers amplified a 112-bp fragment 356 bp downstream from the start codon and specific for CYP2D6. The target sequence is located internal to the full-length CYP2D6 RNA transcript. Primer design was based on the CYP2D6 sequence deposited in GenBank (accession number M33388 [GenBank] .1).
A fragment of ß-actin (450 bp) was detected with the use of the following primers: forward 5'-CGT ACC ACT GGC ATC GTG AT, and reverse 5'-GTG TTG GCG TAC AGG TCT TTG, and amplified with conditions identical to those of the short CYP2D6 mRNA fragment. Reaction mixtures and equipment used were the same as those described above for the full-length CYP2D6 transcript. Again, the same set of positive and negative controls described above was included for both the ß-actin and short-fragment reactions.
RT-PCR was carried out as described above with the following exceptions: primer annealing was at 60°C throughout, elongation was for 45 s, and the second cycling step was 35 cycles, not 25. Products of short-fragment CYP2D6 RNA were separated on 2.0% agarose gel stained with ethidium bromide and analyzed as described above based on digitized band intensity of the fluorescence images.
| Results |
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To evaluate whether very low CYP2D6 enzyme activity in lymphocytes was not
detected due to limited sensitivity of dextromethorphan assay, we turned to a
much more sensitive CYP2D6-selective probe, R-568. R-568 is a calcimimetic
(Coburn and Maung 2000
;
Goodman et al., 2000
) that has
been reported to be a highly sensitive and specific catalytic probe for CYP2D6
enzyme. We have shown recently that R-568 is about 20-fold more sensitive than
dextromethorphan for assessing CYP2D6-mediated metabolism (L. McConnachie, K.
Kowdley, A. Levy, B. Tung, K. Thummel, B. Phillips, M. Bajpai, V. Chi, J.
Esmay, D. Shen, and R. Ho, manuscript submitted). However, even with 5 mg/ml
of lymphocyte protein and incubation times up to 30 min, no enzymatic
oxidation of R-568 was detected (Table
1 and Fig. 1).
Because this LC/MS assay for R-568 has a detection limit of 15 fg on-column,
we estimated that as little as 2.5 fmol of product would have been detected
under our experimental conditions.
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We then investigated whether the inability to detect CYP2D6 activity was
due to inadequate or absent cofactors and coenzymes necessary for product
formation. We systematically supplemented the incubate with cytochrome
b5 and NADPH-P450 reductase, which are necessary for
P450-mediated catalysis. These cofactors were added in a 1:3:20 molar ratio
(CYP2D6/b5/reductase). The amount of coenzymes employed
was based on an estimate of a 100-fold lower CYP2D6 protein expression in
lymphocytes relative to liver (7 pmol/mg). This ratio is consistent with
reports by other investigators (Yamazaki
et al., 1999
;Venkatakrishnan
et al., 2000
). The supplementation also included an excess of
cofactors. However, cofactor and coenzyme supplementation did not result in
detectable metabolite formation (Table
1; Fig. 1). In
contrast, when we added a small amount of recombinant CYP2D6 enzyme (0.4 pmol;
equivalent to about 1/20th of this enzyme reported to be present in each
milligram of liver protein) into the lymphocyte homogenate, the R-568 product
(metabolite) M1 was readily detected (Table
1; Fig. 1).
The lack of CYP2D6 catalytic activity is consistent with the results obtained with Northern blot analysis for CYP2D6 RNA. In this experiment, we were only able to detect the CYP2D6 RNA transcript in the human liver. No hybridization of the probe occurred in lanes containing increasing amounts of human lymphocyte RNA (Fig. 2).
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We confirmed the negative data obtained with Northern blot analysis with an additional analysis by RT-PCR. Typical results from the RT-PCR experiments are depicted in Fig. 3 (AC). In lymphocyte sample collected from eight different donors, no full-length (1.5-kb) CYP2D6 mRNA transcript was detectable, even using up to 1 µg of total lymphocyte RNA as a template (Fig. 3C). Based on detection limits of this assay, we estimated that the full-length transcript, if expressed in lymphocytes, must be expressed at fewer than 2500 copies per µg of total RNA. On the other hand, a truncated CYP2D6 RNA fragment (112 bp) found within full-length transcript was readily detectable in the same set of eight donors (Fig. 3B). It should be noted that ß-actin was expressed at similar levels and was readily detectable from the same lymphocyte donors (Fig. 3A). Given that RT-PCR is an exquisitely sensitive method of detecting mRNA transcripts, and we have employed up to 1 µg of total RNA in each reaction, it is unlikely that the full-length CYP2D6 transcript is expressed in lymphocytes.
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| Discussion |
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The inability to detect turnover of R-568 in human lymphocyte homogenates could have been due to high protein concentrations masking CYP2D6 activity (e.g., through nonspecific binding of R-568). This interference was ruled out by our ready ability to detect metabolite formation with the addition of 0.4 pmol of recombinant CYP2D6 to lymphocyte homogenates (Table 1).
The lack of CYP2D6 enzyme activity in lymphocytes is explained by the
absence of full-length RNA transcripts as demonstrated by Northern blot
detection and RT-PCR analysis (Fig.
3). Instead, truncated mRNA transcripts were readily detectable
(Figs. 2 and
3). Our data agree with
previous reports of the presence of short fragments of CYP2D6 mRNA in human
lymphocytes (Carcillo et al.,
1996
; Krovat et al.,
2000
). However, the detection of a CYP2D6 mRNA fragment does not
indicate the presence of a full transcript that is needed for producing a
functional enzyme but, rather, the production of truncated transcripts. The
present result calls into question the potential utility of lymphocytes as a
biomarker. It is very unlikely that the truncated CYP2D6 mRNA fragment,
although present in abundance, could be translated into functional protein and
reflect regulation of hepatic CYP2D6.
Transcription of CYP2D6 in the liver has been reported to be, at least
partially, under control of HNF4 (Zanger
et al., 2001
; Hara and Adachi,
2002
); the associated transcription factors are not present in
lymphocytes. There are several reports indicating that although HNF4 plays a
role in the regulation of numerous P450s (e.g.,
Jover et al., 2001
), its
expression is limited to the kidney, intestine, pancreas, and liver
(Peiler et al., 2000
). Thus,
the expression of CYP2D6 is tissue-specific; lymphocytes, lacking this
transcription factor, do not appear to express full-length mRNA transcripts or
functional enzyme. It is not known whether there is an immunoreactive CYP2D6
protein expressed in lymphocytes (Krovat
et al., 2000
).
One previous study has suggested that expression of short-sequence CYP2D6
mRNA in lymphocytes is correlated with in vivo CYP2D6 activity
(Carcillo et al., 1996
) and
that the presence of truncated CYP2D6 mRNA in lymphocytes might be a viable
biomarker of hepatic activity (Krovat et
al., 2000
). However, the present data do not provide a
physiological basis for the putative linkage. We have shown that only short
fragments of CYP2D6 message are expressed in lymphocytes, and that this
expression is independent of total message transcribed.
Figure 3, A to C, shows that
the abundance of short-fragment product is not related to full-length CYP2D6
product because the band intensities of liver and lymphocyte short-fragment
products are very similar; yet, there are no full-length products for
lymphocytes. Therefore, the presence of fragments of CYP2D6 mRNA transcripts
in lymphocytes is not necessarily related to transcription to a full-length
product or to translation of functional protein. Interestingly, our
observation with CYP2D6 transcription in lymphocytes is probably an
exception among P450 genes, since several reports have established that there
is measurable expression of CYP1B1, CYP2E1, and
CYP1A1 mRNA, and functional CYP1A1 protein
(Vanden Heuvel et al., 1993
;
Raucy et al., 1997
;
Baron et al., 1998
;
Dey et al., 2001
). It appears
that CYP2D6 does not codifferentiate or distribute with the above-mentioned
P450 isoenzymes and that lymphocyte expression of P450s is isoform-specific.
The regulatory mechanisms leading to differential tissue expression of
cytochrome P450 isoenzymes, particularly their expression in lymphocytes,
warrant further exploration.
In summary, we have conducted a thorough investigation of CYP2D6 enzymatic activity and mRNA expression in human lymphocytes. With a highly sensitive CYP2D6 probe substrate, R-568, no enzyme activity was detectable in lymphocytes. These data are supported by the absence of full-length CYP2D6 mRNA transcripts as assessed by Northern blot and RT-PCR analyses. Only truncated transcripts of CYP2D6 mRNA were present in lymphocytes. Together, these data suggest that it is not feasible to use human lymphocyte expression of CYP2D6 as a quantitative biomarker of hepatic CYP2D6 activity.
| Footnotes |
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1 Abbreviations used are: P450, cytochrome P450; bp, base pair(s); RT-PCR,
reverse transcriptase-polymerase chain reaction; kb, kilobase(s); NPS-1378,
HNF4, hepatocyte nuclear factor 4; R-568,
(R)-N-(3-methoxy-
-phenylethyl)-3-(2'-chlorophenyl)-1-(propylamine
hydrocholoride). ![]()
Address correspondence to: Rodney J. Y. Ho, Department of Pharmaceutics, University of Washington, Box 357610, Seattle, WA 98195-7610. E-mail: rodneyho{at}u.washington.edu
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