Table 1

Oligonucleotide probes generated for analysis of OCT expression by bDNA signal amplification

GeneGenBank IDTargetFunctionProbe Sequence
OCT1 X98344 162–179CE gtccaggggtgaagcccaTTTTTctcttggaaagaaagt
X98344 509–526CE gcccaggaagaagcccaaTTTTTctcttggaaagaaagt
NM_012697657–673CE catgccctgcagcaggcTTTTTctcttggaaagaaagt
X98344 675–692CE cccagctgcccttgctgaTTTTTctcttggaaagaaagt
X98344 181–200LE ccccaggattctggcaataaTTTTTaggcataggacccgtgtct
X98344 300–323LE agtccacctcatacctcatgcactTTTTTaggcataggacccgtgtct
X98344 465–484LE cactttccaggcgtctccacTTTTTaggcataggacccgtgtct
X98344 527–547LE aatgtaacccacaaccagggaTTTTTaggcataggacccgtgtct
X98344 591–611LE caccggacacagatgtgaccaTTTTTaggcataggacccgtgtct
X98344 612–629LE gggccaccgctgttagcaTTTTTaggcataggacccgtgtct
X98344 694–715LE tgtgatcaaggtatagccggacTTTTTaggcataggacccgtgtct
X98344 716–736LE gtagccagagccgacaaactcTTTTTaggcataggacccgtgtct
X98344 203–219BL cgctggctcagctcagc
X98344 239–260BL gcacagtgtagttcagctcctc
X98344 262–279BL tccgaaggtcccaggccc
X98344 418–438BL gaggagccgggagtgtcgtat
X98344 439–463BL caccaggttaaactcagtgacgatg
X98344 485–508BL gttcacacaggactgaaaaaggtc
X98344 552–570BL agcttacggccaaacctgt
X98344 571–590BL gcgtggtcaccaagagacag
X98344 631–656BL gaaagagcaacatggatgtatagtct
OCT2 D83044 61–80CE gcagctgttcctgaggcttcTTTTTctcttggaaagaaagt
D83044 316–333CE tccgaaggtcccagacccTTTTTctcttggaaagaaagt
D83044 645–666CE gccccagagatagcattgatgaTTTTTctcttggaaagaaagt
D83044 667–686CE tgggagaaatcgccatgagaTTTTTctcttggaaagaaagt
D83044 82–100LE ggtcgacatggtccctggaTTTTTaggcataggacccgtgtct
D83044 102–128LE cccctatatgttctagaatatcatccaTTTTTaggcataggacccgtgtct
D83044 216–237LE tggtggtcaggggtaaatcctaTTTTTaggcataggacccgtgtct
D83044 354–377LE agtccacttcatacctcatgcactTTTTTaggcataggacccgtgtct
D83044 583–605LE ccgctaggtagccaatcatcataTTTTTaggcataggacccgtgtct
D83044 606–624LE aacttccggccaaacctgtTTTTTaggcataggacccgtgtct
D83044 687–709LE aaacaccaacatccaggcatagtTTTTTaggcataggacccgtgtct
D83044 130–153BL gtttgtttctgaaaaaggtggaat
D83044 154–177BL gacagcagagctaagaggaaaaat
D83044 178–194BL tgggggtgaaggcacca
D83044 195–215BL ggaaaacgatgcccacgtaga
D83044 238–255BL gccccaggactccagcag
D83044 257–273BL cgctggctcagcttggc
D83044 293–314BL gcacggtgtagttcagctcctc
D83044 419–437BL ggttcctgtccgcagccag
D83044 472–492BL gaggagccgggagtgttgtat
D83044 493–517BL caccaggttaaactcagtgacaatg
D83044 518–538BL cagcatccaggagtgagcaca
D83044 539–563BL cgttcactactgactgaaacaggtc
D83044 564–582BL gcaccgatgaaaaacccca
D83044 625–644BL ggatggtgaccaagaggcag
OCT3 AF055286 616–633CE gggacgtgaagctccggcTTTTTctcttggaaagaaagt
AF055286 668–690CE gtattggtgtcttccagcaggtaTTTTTctcttggaaagaaagt
AF055286 711–728CE ggaaggcagcgagtgggtTTTTTctcttggaaagaaagt
AF055286 900–918CE ctgccgtatctgtccgctgTTTTTctcttggaaagaaagt
AF055286 1005–1023CE ccttgcaggaagcggaagaTTTTTctcttggaaagaaagt
AF055286 595–615LE gtggtgaggttccactcctccTTTTTaggcataggacccgtgtct
AF055286 634–649LE gccacggcgctcagctTTTTTaggcataggacccgtgtct
AF055286 691–710LE cgcagctgagctctgagctgTTTTTaggcataggacccgtgtct
AF055286 745–761LE cgctgcagggcaccagaTTTTTaggcataggacccgtgtct
AF055286 762–779LE ccacatagcgccagtcgcTTTTTaggcataggacccgtgtct
AF055286 801–821LE cgcagacaaggtcaaactggcTTTTTaggcataggacccgtgtct
AF055286 822–839LE ccaacatccaggcgttgcTTTTTaggcataggacccgtgtct
AF055286 879–899LE catagcccaaggtaaaagcccTTTTTaggcataggacccgtgtct
AF055286 919–944LE aacaggatattaagtaaacgatgagcTTTTTaggcataggacccgtgtct
AF055286 945–961LE cgtgatgccaacgccgaTTTTTaggcataggacccgtgtct
AF055286 962–981LE gcaaacgccaccacaactccTTTTTaggcataggacccgtgtct
AF055286 1024–1041LE gccccctttccaaacaccTTTTTaggcataggacccgtgtct
AF055286 650–667BL gcggtgacagtggccttg
AF055286 729–744BL ggagcggagcggttgg
AF055286 780–800BL tgacgatggtggagtgggtct
AF055286 840–859BL caagatggcttgggtgaggt
AF055286 860–878BL cagccaggaagccaaggtt
AF055286 982–1004BL tcacaaacacagaaaaattcggt
OCTN1 AF169831 1226–1247CE cagccaggctgtgaaataagctTTTTTctcttggaaagaaagt
AF169831 1268–1292CE cagcaccccagctataatatatctcTTTTTctcttggaaagaaagt
AF169831 1368–1386CE ccccaaatttccccagcatTTTTTctcttggaaagaaagt
AF169831 1411–1430CE gagctccgctgtgaagacgtTTTTTctcttggaaagaaagt
AF169831 1677–1699CE tctctgtccatggagactgttgaTTTTTctcttggaaagaaagt
AF169831 1830–1851CE tgacttctcgatcctcctgtccTTTTTctcttggaaagaaagt
AF169831 1293–1311LE gcacacctcctccccagaaTTTTTaggcataggacccgtgtct
AF169831 1432–1450LE ttcctgaccagggttgggtTTTTTaggcataggacccgtgtct
AF169831 1451–1469LE ggtgatgcccacagccatgTTTTTaggcataggacccgtgtct
AF169831 1471–1488LE ccaccctcgaggccatggTTTTTaggcataggacccgtgtct
AF169831 1509–1531LE ttataagcacccaggtacacgaaTTTTTaggcataggacccgtgtct
AF169831 1608–1632LE agttctctggtagagtcactccaaaTTTTTaggcataggacccgtgtct
AF169831 1633–1654LE ctgactttctgcatctgctccaTTTTTaggcataggacccgtgtct
AF169831 1655–1676LE ttttttcccacatctgaaccctTTTTTaggcataggacccgtgtct
AF169831 1748–1768LE tgtttttcagtttgccacgtgTTTTTaggcataggacccgtgtct
AF169831 1769–1788LE cctgctcattgtaccccaccTTTTTaggcataggacccgtgtct
AF169831 1809–1828LE cataccaagagggcaggcttTTTTTaggcataggacccgtgtct
AF169831 1248–1267BL cgaggcagggttcgaagtag
AF169831 1312–1334BL aggtaccacttggaccaagagaa
AF169831 1335–1360BL ccaatggacacaaagttgtaatcttc
AF169831 1489–1506BL agggggcaatgatgctgc
AF169831 1560–1583BL gattccaatgaggacagtcagact
AF169831 1584–1607BL actctcagggaaaaaaagtgtgat
AF169831 1701–1725BL cagttattagaaccttggggttttc
AF169831 1726–1747BL ccttggaaaccttgtcagaatg
AF169831 1790–1807BL caggctggctccagcaca
OCTN2 AB017260 55–73CE tccggggatctggggatacTTTTTctcttggaaagaaagt
AB017260 145–161CE tgaggcgctggaagggcTTTTTctcttggaaagaaagt
AB017260 182–200CE agccattggggatgatgctTTTTTctcttggaaagaaagt
AB017260 571–592CE tgagagctgtcccgaaatgaagTTTTTctcttggaaagaaagt
AB017260 747–769CE ggaaagaatttctgttcccaggaTTTTTctcttggaaagaaagt
AB017260 770–793CE ggcgaatataattcgaattgacttTTTTTctcttggaaagaaagt
AB017260 74–91LE agcctcccacaacacccgTTTTTaggcataggacccgtgtct
AB017260 108–127LE ggcggtcacctcgtcgtagtTTTTTaggcataggacccgtgtct
AB017260 201–224LE ggaacacgatagacataccattgaTTTTTaggcataggacccgtgtct
AB017260 239–257LE gcacaaggcaacggtgctcTTTTTaggcataggacccgtgtct
AB017260 295–315LE ttcgtctccaacgggatactgTTTTTaggcataggacccgtgtct
AB017260 316–333LE ggcacctgtcgtccgtccTTTTTaggcataggacccgtgtct
AB017260 350–368LE cgatggtggccagtcggtaTTTTTaggcataggacccgtgtct
AB017260 404–422LE gctgctccaggtccacgtcTTTTTaggcataggacccgtgtct
AB017260 444–464LE ccttgttgtactcccagccatTTTTTaggcataggacccgtgtct
AB017260 486–506LE acaccaggtcccactctgtcaTTTTTaggcataggacccgtgtct
AB017260 507–528LE ggggctttccagtcatccttacTTTTTaggcataggacccgtgtct
AB017260 552–570LE gagcccatcagcacacccaTTTTTaggcataggacccgtgtct
AB017260 614–634LE gcccatggtcaaaaacagcacTTTTTaggcataggacccgtgtct
AB017260 680–704LE ggacaaaaagcactgtaaacatctcTTTTTaggcataggacccgtgtct
AB017260 705–725LE agatctgacccatgccaacaaTTTTTaggcataggacccgtgtct
AB017260 726–746LE caaatgctgccacgtagttggTTTTTaggcataggacccgtgtct
AB017260 92–107BL cccgcatgccgtcctc
AB017260 128–144BL ccccactcgcccaggaa
AB017260 162–181BL ggcgctgagcaggaagaaaa
AB017260 225–238BL cggggtccccgcca
AB017260 258–279BL ctgctcaagttcacggtgtgag
AB017260 280–294BL tggttgcgccacgcg
AB017260 334–349BL gcggcggcagctctga
AB017260 369–387BL cccagcgcagagaagttgg
AB017260 388–403BL ccgtcccggctccagc
AB017260 423–443BL ccaggcagttctcttgttcca
AB017260 465–485BL cgatggtggacaggaagacgt
AB017260 529–551BL cgaaaaacaaggaggtggtgagt
AB017260 593–613BL attcttgcgaccaaacctgtc
AB017260 635–655BL gaagctgaagccagtctgcat
AB017260 656–679BL gaagttcacagagaagagctgcag

Target refers to the sequence of the mRNA transcript as enumerated in the GenBank file. Function refers to the utility of the oligonucleotide probe in the bDNA assay.

  • CE, capture extender; LE, label extender; BL, blocker probe.