TABLE 1

Oligonucleotide probes generated for analysis: heme oxygenase-1 (HO-1) and microsomal epoxide hydrolase (EH) expression by bDNA signal amplification


Gene

GenBank ID

Targeta

Functionb

Probe Sequence
HO-1 NM_012580 79-101 CE atgaactcagaattctctgcacgTTTTTctcttggaaagaaagt
167-189 CE ctcttccagggccgtatagatatTTTTTctcttggaaagaaagt
190-212 CE ttctgcttgtttcgctctatctcTTTTTctcttggaaagaaagt
270-288 CE ccagaaggccatgtcctgcTTTTTctcttggaaagaaagt
391-408 CE gcgggtatatgcgtgggcTTTTTctcttggaaagaaagt
1-18 LE gagctgtgggcgctccatTTTTTaggcataggacccgtgtct
19-39 LE caaatcctgggacatgctgtcTTTTTaggcataggacccgtgtct
40-58 LE cctccttcaaggcctcggaTTTTTaggcataggacccgtgtct
146-166 LE ggtacaaggaggccatcaccaTTTTTaggcataggacccgtgtct
252-269 LE tctagggcagcccttcggTTTTTaggcataggacccgtgtct
306-326 LE ggtgtgtaagggatggcctccTTTTTaggcataggacccgtgtct
350-369 LE acctcccacctcgtggagacTTTTTaggcataggacccgtgtct
370-390 LE caccagcagctcaggatgagtTTTTTaggcataggacccgtgtct
409-429 LE ccctgagaggtcacccaggtaTTTTTaggcataggacccgtgtct
430-452 LE gcaatcttcttcaggacctgaccTTTTTaggcataggacccgtgtct
59-78 BL gatgtgcacctccttggtgg
102-124 BL cctgacccttctgaaagttcctc
125-145 BL gcttaaagccttccctggaca
213-230 BL agcggggcatagactggg
231-251 BL tgcagctcctcagggaagtag
289-305 BL tgccagtggggcccata
327-349 BL gctttacgtagtgctgtgtggct
EH NM_01284 383-401 CE agccatagtggaagcggctTTTTTctcttggaaagaaagt
494-514 CE cccttcgatcttggtcttgaaTTTTTctcttggaaagaaagt
591-608 CE aggatccaggccagccatTTTTTctcttggaaagaaagt
789-807 CE aatttctggaagcccagccTTTTTctcttggaaagaaagt
933-950 CE agcgttggcccaggagagTTTTTctcttggaaagaaagt
343-363 LE gcccggaacctatctatcctcTTTTTaggcataggacccgtgtct
428-450 LE aactcgttcctccagtaggacacTTTTTaggcataggacccgtgtct
451-470 LE ccacctgcttcctccagtcaTTTTTaggcataggacccgtgtct
471-493 LE gtgagggtactggttgaggatctTTTTTaggcataggacccgtgtct
572-590 LE gcaccatcagcaagggcttTTTTTaggcataggacccgtgtct
657-677 LE cgtgctcgtcactcagaccgtTTTTTaggcataggacccgtgtct
678-700 LE cgagggacagatgacttcaaacaTTTTTaggcataggacccgtct
701-723 LE tctgagtagccatagccaggaatTTTTTaggcataggacccgtgtt
828-845 LE tgcagatgagggacccccTTTTTaggcataggacccgtgtct
846-864 LE accatctgggccatgttggTTTTTaggcataggacccgtgtct
865-883 LE gcctttcacgtggttgggaTTTTTaggcataggacccgtgtct
908-932 LE gagtcatggtgtaaaaacttctcgaTTTTTaggcataggacccgtct
951-970 LE gtagccaaggaatctcccgaTTTTTaggcataggacccgtgtct
364-382 BL gccctccaaaggtggggat
402-427 BL cactttcttcatgtagttggagttga
515-538 BL cacatggatgaagtggatgtcaag
539-555 BL ggcagctggggaggctt
556-571 BL tggggtgcgccctgag
609-634 BL tgggatgatcttgtaaaactcataga
635-656 BL gggacttggggtcagtcagtag
724-743 BL aacctttcttgctggatgcc
744-763 BL cgcagtggccaccgaattta
764-788 BL gtgtcatcagcttgtagaaaatcct
808-827 BL agtccccgccttgaatgtag


884-907
BL
aatgaaagccatatttaagtgcag
  • CE, capture extender; LE, label extender; BL, blocker probe.

  • a Target refers to the sequence of the mRNA transcript as enumerated in the GenBank file.

  • b Function refers to the utility of the oligonucleotide probe in the bDNA assay.