cis eQTLs
A cis eQTL is defined as a significant association between the expression profile of a transcript and an allelic variation of a SNP located within 5 megabases of each other. The SNPs and genes that achieved statically significant cis associations by a Pearson correlation coefficient are listed. Microarrays often contain multiple probe sets per gene, so the specific probe sets that generated the associated gene expression values are listed. Nucleotide position refers to the location of the associated SNP.
Gene | Probe ID | SNP ID | Pearson | p | Chr | Position |
|---|---|---|---|---|---|---|
| Zfp106 | gnf1m16196_s_at | rs13476746 | 0.72708 | 4.60E—05 | 2 | 123148841 |
| Zfp106 | gnf1m16196_s_at | rs13476758 | 0.70307 | 7.20E—05 | 2 | 126983455 |
| Ensa | gnf1m17496_a_at | rs13477279 | 0.71934 | 1.10E—05 | 3 | 100870621 |
| Gstm5 | gnf1m02321_a_at | rs8261742 | 0.71308 | 2.75E—04 | 3 | 111150836 |
| C80638 | gnf1m11435_s_at | rs3088636 | 0.75995 | 8.55E—03 | 3 | 142702918 |
| C80638 | gnf1m11435_s_at | rs13477456 | 0.74043 | 7.78E—03 | 3 | 146217869 |
| A630078I01Rik | gnf1m20422_at | rs13477457 | 0.71024 | 1.44E—04 | 3 | 146408674 |
| C030023A16Rik | gnf1m26632_at | rs8274321 | 0.70048 | 5.40E—05 | 4 | 129079328 |
| 2410081M15Rik | gnf1m10324_a_at | rs13477994 | 0.76918 | 7.01E—04 | 4 | 133594418 |
| Tmem39b | gnf1m16524_s_at | rs13477994 | 0.7044 | 7.98E—03 | 4 | 133594418 |
| 5730438N18Rik | gnf1m07480_a_at | rs13478048 | 0.73495 | 1.23E—03 | 4 | 148422515 |
| Cav1 | gnf1m13227_a_at | rs13478643 | 0.70583 | 3.82E—03 | 6 | 16526119 |
| Capza2 | gnf1m23213_a_at | rs13478659 | 0.74023 | 4.98E—03 | 6 | 23719203 |
| Capza2 | gnf1m23213_a_at | rs13478660 | 0.70859 | 1.02E—02 | 6 | 23849922 |
| Slc2a3 | gnf1m00559_a_at | rs13479048 | 0.76216 | 4.20E—05 | 6 | 132747781 |
| Emg1 | gnf1m03141_a_at | rs13479048 | 0.72022 | 3.30E—03 | 6 | 132747781 |
| Mlf2 | gnf1m06480_a_at | rs13479048 | 0.72337 | 5.06E—04 | 6 | 132747781 |
| 2410127E16Rik | gnf1m16200_at | rs4226547 | 0.75842 | 7.03E—03 | 7 | 29741607 |
| 9630047A19Rik | gnf1m21858_at | rs6230901 | 0.72126 | 1.71E—04 | 7 | 32095986 |
| 2410127E16Rik | gnf1m16200_at | rs6206014 | 0.7224 | 5.38E—03 | 7 | 33164014 |
| Olfr646 | gnf1m07159_at | rs4226825 | 0.72983 | 2.30E—05 | 7 | 92158415 |
| 4930507A01Rik | gnf1m16966_a_at | rs3696853 | 0.72628 | 1.70E—05 | 8 | 40944494 |
| 2310021F11Rik | gnf1m13321_at | rs13480630 | 0.70371 | 2.80E—05 | 10 | 69713270 |
| Mterfd3 | gnf1m29767_a_at | rs13480677 | 0.73727 | 3.20E—05 | 10 | 86902245 |
| 2900018E21Rik | gnf1m14364_at | rs13480711 | 0.70122 | 1.22E—04 | 10 | 95616668 |
| Cpsf6 | gnf1m27917_s_at | rs13480799 | 0.7385 | 2.11E—04 | 10 | 125495706 |
| 4933439C20Rik | gnf1m18300_a_at | rs13480836 | 0.7945 | 1.14E—03 | 11 | 3452106 |
| 1200002O22Rik | gnf1m16716_a_at | rs13481546 | 0.74076 | 1.20E—05 | 12 | 73732627 |
| Ranbp9 | gnf1m03849_a_at | rs13481795 | 0.73612 | 5.40E—05 | 13 | 45949979 |
| 6430605P16Rik | gnf1m19479_at | rs4230398 | 0.76911 | 5.00E—06 | 14 | 50719913 |
|
Cab39l
| gnf1m13054_at | rs4230398 | 0.75032 | 3.30E—05 | 14 | 50719913 |
ID, identification number; Chr, chromosome.