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CYP264B1 from Sorangium cellulosum So ce56: a fascinating norisoprenoid and sesquiterpene hydroxylase

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Abstract

Many terpenes and terpenoid compounds are known as bioactive substances with desirable fragrance and medicinal activities. Modification of such compounds to yield new derivatives with desired properties is particularly attractive. Cytochrome P450 monooxygenases are potential enzymes for these reactions due to their capability of performing different reactions on a variety of substrates. We report here the characterization of CYP264B1 from Sorangium cellulosum So ce56 as a novel sesquiterpene hydroxylase. CYP264B1 was able to convert various sesquiterpenes including nootkatone and norisoprenoids (α-ionone and β-ionone). Nootkatone, an important grapefruit aromatic sesquiterpenoid, was hydroxylated mainly at position C-13. The product has been shown to have the highest antiproliferative activity compared with other nootkatone derivatives. In addition, CYP264B1 was found to hydroxylate α- and β-ionone, important aroma compounds of floral scents, regioselectively at position C-3. The products, 3-hydroxy-β-ionone and 13-hydroxy-nootkatone, were confirmed by 1H and 13C NMR. The kinetics of the product formation was analyzed by high-performance liquid chromatography, and the K m and k cat values were calculated. The results of docking α-/β-ionone and nootkatone into a homology model of CYP264B1 revealed insights into the structural basis of these selective hydroxylations.

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References

  • Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL Workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22:195–201

    Article  CAS  Google Scholar 

  • Bell SG, Dale A, Rees NH, Wong LL (2009) A cytochrome P450 class I electron transfer system from Novosphingobium aromaticivorans. Appl Microbiol Biotechnol 86:163–175

    Article  Google Scholar 

  • Bernhardt R (2006) Cytochromes P450 as versatile biocatalysts. J Biotechnol 124:128–145

    Article  CAS  Google Scholar 

  • Bicas JL, Dionisio AP, Pastore GM (2009) Bio-oxidation of terpenes: an approach for the flavor industry. Chem Rev 109:4518–4531

    Article  CAS  Google Scholar 

  • Borges KB, Borges WS, Durán-Patrón R, Pupo MT, Bonato PS, Collado IG (2009) Stereoselective biotransformations using fungi as biocatalysts. Tetrahedron-Asymmetry 20:385–397

    Article  CAS  Google Scholar 

  • Brenna E, Fuganti C, Serra S, Kraft P (2002) Optically ative inones and derivatives: preparation and olfactory properties. Eur J Org Chem 2002:967–978

  • Cankar K, an Houwelingen A, Bosch D, Sonke T, Bouwmeester H, Beekwilder J (2011) A chicory cytochrome P450 mono-oxygenase CYP71AV8 for the oxidation of (+)-valencene. FEBS Letters 585:178–182

    Google Scholar 

  • Celik A, Flitsch SL, Turner NJ (2005) Efficient terpene hydroxylation catalysts based upon P450 enzymes derived from actinomycetes. Org Biomol Chem 3:2930–2934

    Article  CAS  Google Scholar 

  • Chu SS, Jiang GH, Liu ZL (2011) Insecticidal compounds from the essential oil of Chinese medicinal herb Atractylodes chinensis. Pest Manag Sci. doi:10.1002/ps.2180

  • Curci R, D’Accolti L, Fusco C (2006) A novel approach to the efficient oxygenation of hydrocarbons under mild conditions. Superior oxo transfer selectivity using dioxiranes. Acc Chem Res 39:1–9

    Article  CAS  Google Scholar 

  • Denisov IG, Makris TM, Sligar SG, Schlichting I (2005) Structure and chemistry of cytochrome P450. Chem Rev 105:2253–2278

    Article  CAS  Google Scholar 

  • Edris AE (2007) Pharmaceutical and therapeutic potentials of essential oils and their individual volatile constituents: a review. Phytother Res 21:308–323

    Article  CAS  Google Scholar 

  • Ewen KM, Hannemann F, Khatri Y, Perlova O, Kappl R, Krug D, Hüttermann J, Müller R, Bernhardt R (2009) Genome mining in Sorangium cellulosum So ce56: identification and characterization of the homologous electron transfer proteins of a myxobacterial cytochrome P450. J Biol Chem 284:28590–28598

    Article  CAS  Google Scholar 

  • Fraatz MA, Berger RG, Zorn H (2009) Nootkatone-a biotechnological challenge. Appl Microbiol Biotechnol 83:35–41

    Article  CAS  Google Scholar 

  • Fraga BM (2006) Natural sesquiterpenoids. Nat Prod Rep 23:943–972

    Article  CAS  Google Scholar 

  • Furusawa M, Hashimoto T, Noma Y, Asakawa Y (2005) Biotransformation of citrus aromatics nootkatone and valencene by microorganisms. Chem Pharm Bull (Tokyo) 53:1423–1429

    Article  CAS  Google Scholar 

  • Galani VJ, Patel BG, Rana DG (2010) Sphaeranthus indicus Linn.: a phytopharmacological review. Int J Ayurveda Res 1:247–253

    Article  Google Scholar 

  • Girhard M, Klaus T, Khatri Y, Bernhardt R, Urlacher VB (2010) Characterization of the versatile monooxygenase CYP109B1 from Bacillus subtilis. Appl Microbiol Biotechnol 87:595–607

    Article  CAS  Google Scholar 

  • Gliszczyńska A, Łysek A, Janeczko T, Świtalska M, Wietrzyk J, Wawrzeńczyk C (2011) Microbial transformation of (+)-nootkatone and the antiproliferative activity of its metabolites. Bioorg Med Chem 19:2464–2469

    Article  Google Scholar 

  • Guex N, Peitsch MC (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modelling. Electrophoresis 18:2714–2723

    Article  CAS  Google Scholar 

  • Hannemann F, Bichet A, Ewen KM, Bernhardt R (2007) Cytochrome P450 systems-biological variations of electron transport chains. Biochim Biophys Acta 1770:330–344

    Article  CAS  Google Scholar 

  • Hegazy M-EF, Kuwata C, Matsushima A, Ahmed AA, Hirata T (2006) Biotransformation of sesquiterpenoids having α-, β-unsaturated carbonyl groups with cultured plant cells of Marchantia polymorpha. J Mol Catalysis B: Enzymatic 39:13–17

    Article  CAS  Google Scholar 

  • Huey R, Morris GM, Olson AJ, Goodsell DS (2007) A semiempirical free energy force field with charge-based desolvation. J Comput Chem 28:1145–1152

    Article  CAS  Google Scholar 

  • Jung C, Ristau O, Rein H (1991) The high-spin/low-spin equilibrium in cytochrome P-450—a new method for determination of the high-spin content. Biochim Biophys Acta 1076:130–136

    Article  CAS  Google Scholar 

  • Khatri Y, Girhard M, Romankiewicz A, Ringle M, Hannemann F, Urlacher VB, Hutter MC, Bernhardt R (2010a) Regioselective hydroxylation of norisoprenoids by CYP109D1 from Sorangium cellulosum So ce56. Appl Microbiol Biotechnol 88:485–495

    Article  CAS  Google Scholar 

  • Khatri Y, Hannemann F, Ewen K, Pistorius M, Perlova D, Kagawa O, Brachmann N, Muller AO, Bernhardt R (2010b) The CYPome of Sorangium cellulosum So ce56 and identification of CYP109D1 as a new fatty acid hydroxylase. Chem Biol 17:1295–1305

    Article  CAS  Google Scholar 

  • Khatri Y, Hannemann F, Perlova O, Müller R, Bernhardt R (2011) Investigation of cytochromes P450 in myxobacteria: excavation of cytochromes P450 from the genome of Sorangium cellulosum So ce56. FEBS Lett 585:1506–1513

    Article  CAS  Google Scholar 

  • Larroche C, Creuly C, Gros JB (1995) Fed-batch biotransformation of β-ionone by Aspergillus niger. Appl Microbiol Biotechnol 43:222–227

    Article  CAS  Google Scholar 

  • Lepesheva GI, Podust LM, Bellamine A, Waterman MR (2001) Folding requirements are different between sterol 14alpha-demethylase (CYP51) from Mycobacterium tuberculosis and human or fungal orthologs. J Biol Chem 276:28413–28420

    Article  CAS  Google Scholar 

  • Loeber DE, Russell SW, Toube TP, Weedon BCL, Diment J (1971) Carotenoids and related compounds. Part XXVIII. Syntheses of zeaxanthin, β-cryptoxanthin, and zeinoxanthin (α-cryptoxanthin). J Chem Soc C:404–408

    Google Scholar 

  • Luthra A, Denisov IG, Sligar SG (2011) Spectroscopic features of cytochrome P450 reaction intermediates. Arch Biochem Biophys 507:26–35

    Article  CAS  Google Scholar 

  • Lutz-Wahl S, Fischer P, Schmidt-Dannert C, Wohlleben W, Hauer B, Schmid RD (1998) Stereo- and regioselective hydroxylation of α-ionone by Streptomyces strains. Appl Environ Microbiol 64:3878–3881

    CAS  Google Scholar 

  • Mikami Y, Fukunaga Y, Arita M, Kisaki T (1981) Microbial transformation of α-ionone and β-methyl-ionone. Appl Environ Microbiol 41:610–617

    CAS  Google Scholar 

  • Miyazawa M, Nakamura Y, Ishikawa Y (2000) Insecticidal sesquiterpene from Alpinia oxyphylla against Drosophila melanogaster. J Agric Food Chem 48:3639–3641

    Article  CAS  Google Scholar 

  • Morris GM, Goodsell DS, Halliday RS, Huey R, Hart WE, Belew RK, Olson AJ (1998) Automated docking using a Lamarckian genetic algorithm and empirical binding free energy function. J Comput Chem 19:1639–1662

    Article  CAS  Google Scholar 

  • Munro AW, Lindsay JG, Coggins JR, Kelly SM, Price NC (1994) Structural and enzymological analysis of the interaction of isolated domains of cytochrome P-450 BM3. FEBS Lett 343:70–74

    Article  CAS  Google Scholar 

  • Murase T, Misawa K, Haramizu S, Minegishi Y, Hase T (2010) Nootkatone, a characteristic constituent of grapefruit, stimulates energy metabolism and prevents diet-induced obesity by activating AMPK. Am J Physiol Endocrinol Metab 299:266–275

    Google Scholar 

  • Nishihara K, Kanemori M, Kitagawa M, Yanagi H, Yura T (1998) Chaperone coexpression plasmids:differential and synergistic roles of DnaK–DnaJ–GrpE and GroEL–GroES in assisting folding of an allergen of Japanese cedar pollen, Cryj2, in Escherichia coli. Appl Environ Microbiol 64:1694–1699

    CAS  Google Scholar 

  • Omura T, Sato R (1964) The carbon monoxide-binding pigment of liver microsomes. I. Evidence for its hemoprotein nature. J Biol Chem 239:2370–2378

    CAS  Google Scholar 

  • Ortiz de Montellano PR (2008) Mechanism and role of covalent heme binding in the CYP4 family of P450 enzymes and the mammalian peroxidases. Drug Metab Rev 40:405–426

    Article  CAS  Google Scholar 

  • Panella NA, Dolan MC, Karchesy JJ, Xiong Y, Peralta-Cruz J, Khasawneh M, Montenieri JA, Maupin GO (2005) Use of novel compounds for pest control: insecticidal and acaricidal activity of essential oil components from heartwood of Alaska yellow cedar. J Med Entomol 42:352–358

    Article  CAS  Google Scholar 

  • Poulos TL, Finzel BC, Howard AJ (1986) Crystal structure of substrate-free Pseudomonas putida cytochrome P-450. Biochemistry 25:5314–5322

    Article  CAS  Google Scholar 

  • Poulos TL, Finzel BC, Howard AJ (1987) High-resolution crystal structure of cytochrome P450cam. J Mol Biol 195:687–700

    Article  CAS  Google Scholar 

  • Quaderer R, Omura S, Ikeda H, Cane DE (2006) Pentalenolactone biosynthesis. Molecular cloning and assignment of biochemical function to PTLI, a cytochrome P450 of Streptomyces avermitilis. J Am Chem Soc 128:13036–13037

    Article  CAS  Google Scholar 

  • Ravichandran KG, Boddupalli SS, Hasemann CA, Peterson JA, Deisenhofer J (1993) Crystal structure of hemoprotein domain of P450BM-3, a prototype for microsomal P450’s. Science 261:731–736

    Article  CAS  Google Scholar 

  • Sanner MF (1999) Python: a programming language for software integration and development. J Mol Graph Model 17:57–61

    CAS  Google Scholar 

  • Sauter IP, Dos Santos JC, Apel MA, Cibulski SP, Roehe PM, von Poser GL, Rott MB (2011) Amoebicidal activity and chemical composition of Pterocaulon polystachyum (Asteraceae) essential oil. Parasitol Res 2011:27

    Google Scholar 

  • Schneiker S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Beke T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, Jelsbak L, Kalinowski J, Kegler C, Knauber T, Konietzny S, Kopp M, Krause L, Krug D, Linke B, Mahmud T, Martinez-Arias R, McHardy AC, Merai M, Meyer F, Mormann S, Munoz-Dorado J, Perez J, Pradella S, Rachid S, Raddatz G, Rosenau F, Rückert C, Sasse F, Scharfe M, Schuster SC, Suen G, Treuner-Lange A, Velicer GJ, Vorhölter FJ, Weissman KJ, Welch RD, Wenzel SC, Whitworth DE, Wilhelm S, Wittmann C, Blöcker H, Pühler A, Müller R (2007) Complete genome sequence of the myxobacterium Sorangium cellulosum. Nat Biotech 25:1281–1289

    Article  CAS  Google Scholar 

  • Schwede T, Kopp J, Guex N, Peitsch MC (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 31:3381–3385

    Article  CAS  Google Scholar 

  • Takahashi S, Yeo Y, Greenhagen BT, McMullin T, Song L, Maurina-Brunker J, Rosson R, Noel JP, Chappell J (2007) Metabolic engineering of sesquiterpene metabolism in yeast. Biotechnol Bioeng 97:170–181

    Article  CAS  Google Scholar 

  • Tassaneeyakul W, Guo LQ, Fukuda K, Ohta T, Yamazoe Y (2000) Inhibition selectivity of grapefruit juice components on human cytochromes P450. Arch Biochem Biophys 378:356–363

    Article  CAS  Google Scholar 

  • Urlacher VB, Lutz-Wahl S, Schmid RD (2004) Microbial P450 enzymes in biotechnology. Appl Microbiol Biotechnol 64:317–325

    Article  CAS  Google Scholar 

  • Urlacher VB, Makhsumkhanov A, Schmid RD (2006) Biotransformation of β-ionone by engineered cytochrome P450 BM-3. Appl Microbiol Biotechnol 70:53–59

    Article  CAS  Google Scholar 

  • Wenzel SC, Müller R (2009) Myxobacteria—‘microbial factories’ for the production of bioactive secondary metabolites. Mol Biosyst 5:567–574

    Article  CAS  Google Scholar 

  • Williams JW, Morrison JF (1979) The kinetics of reversible tight-binding inhibition. Methods Enzymol 63:437–467

    Article  CAS  Google Scholar 

  • Zhao B, Lin X, Lei L, Lamb DC, Kelly SL, Waterman MR, Cane DE (2008) Biosynthesis of the sesquiterpene antibiotic albaflavenone in Streptomyces coelicolor A3(2). J Biol Chem 283:8183–8189

    Article  CAS  Google Scholar 

  • Zhu BC, Henderson G, Chen F, Maistrello L, Laine RA (2001) Nootkatone is a repellent for Formosan subterranean termite (Coptotermes formosanus). J Chem Ecol 27:523–531

    Article  CAS  Google Scholar 

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Acknowledgments

This work was supported by a PhD fellowship of the Vietnamese Ministry of Education and Training to T. B. T. L. and by grant DFG Be1343/23-1 to R.B. We are thankful to Wolfgang Reinle for the expression and purification of Adx and AdR.

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Correspondence to Rita Bernhardt.

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Ly, T.T.B., Khatri, Y., Zapp, J. et al. CYP264B1 from Sorangium cellulosum So ce56: a fascinating norisoprenoid and sesquiterpene hydroxylase. Appl Microbiol Biotechnol 95, 123–133 (2012). https://doi.org/10.1007/s00253-011-3727-z

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