… The k-nearest-neighbor method is a pattern-recognition algorithm in which k is a pre-defined …
Then, the candidate site that occupies the majority of the k-nearest sequences is assigned …

Oxygen in the atmosphere is a crucial component for life-sustaining aerobic respiration in
humans. Approximately 95% of oxygen is consumed as energy and ultimately becomes water; …

Recent advances in large-scale sequencing has accelerated the identification of potential
genes. To find the function of these genes, the homology search technique has been routinely …

… After conversion, a simple k-nearest neighbor classifier is used for prediction. Using html,
the evidence for each prediction is shown in two ways: (i) a list of proteins of known localization …

Polarization of macrophages to M1 or M2 cells is important for mounting responses against
bacterial and helminth infections, respectively. Jumonji domain containing-3 (Jmjd3), a …

… amino acids (K or R) or of three basic amino acids (K or R) and … four-residue segment
containing three K or R residues (rule '… If the sum of K and R compositions is higher than 20%, then …

Background In cancer research, the association between a gene and clinical outcome
suggests the underlying etiology of the disease and consequently can motivate further studies. …

The transcription factor Foxp3 is essential for the development of regulatory T (Treg) cells,
yet its expression is insufficient for establishing the Treg cell lineage. Here we showed that …

… Most of the rules described in this work can also be used for eukaryotic proteins with minor
modifications (Nakai and Kanehisa, in preparation). In addition, by regarding the external …

By analyzing 1,780,295 5′-end sequences of human full-length cDNAs derived from 164
kinds of oligo-cap cDNA libraries, we identified 269,774 independent positions of …