Directory of useful decoys, enhanced (DUD-E): better ligands and decoys for better benchmarking
MM Mysinger, M Carchia, JJ Irwin… - Journal of medicinal …, 2012 - ACS Publications
A key metric to assess molecular docking remains ligand enrichment against challenging
decoys. Whereas the directory of useful decoys (DUD) has been widely used, clear areas for …
decoys. Whereas the directory of useful decoys (DUD) has been widely used, clear areas for …
ZINC: a free tool to discover chemistry for biology
JJ Irwin, T Sterling, MM Mysinger… - Journal of chemical …, 2012 - ACS Publications
ZINC is a free public resource for ligand discovery. The database contains over twenty
million commercially available molecules in biologically relevant representations that may be …
million commercially available molecules in biologically relevant representations that may be …
Rapid context-dependent ligand desolvation in molecular docking
MM Mysinger, BK Shoichet - Journal of chemical information and …, 2010 - ACS Publications
In structure-based screens for new ligands, a molecular docking algorithm must rapidly score
many molecules in multiple configurations, accounting for both the ligand’s interactions …
many molecules in multiple configurations, accounting for both the ligand’s interactions …
Automated docking screens: a feasibility study
JJ Irwin, BK Shoichet, MM Mysinger… - Journal of medicinal …, 2009 - ACS Publications
Molecular docking is the most practical approach to leverage protein structure for ligand
discovery, but the technique retains important liabilities that make it challenging to deploy on a …
discovery, but the technique retains important liabilities that make it challenging to deploy on a …
Structure-based ligand discovery for the protein–protein interface of chemokine receptor CXCR4
G-protein–coupled receptors (GPCRs) are key signaling molecules and are intensely studied.
Whereas GPCRs recognizing small-molecules have been successfully targeted for drug …
Whereas GPCRs recognizing small-molecules have been successfully targeted for drug …
Computational models for cytochrome P450: a predictive electronic model for aromatic oxidation and hydrogen atom abstraction
JP Jones, M Mysinger, KR Korzekwa - Drug Metabolism and Disposition, 2002 - ASPET
Experimental observations suggest that electronic characteristics play a role in the rates of
substrate oxidation for cytochrome P450 enzymes. For example, the tendency for oxidation of …
substrate oxidation for cytochrome P450 enzymes. For example, the tendency for oxidation of …
Ab Initio Study of Adsorption and Decomposition of NH3 on Si(100)-(2×1)
Y Widjaja, MM Mysinger… - The Journal of Physical …, 2000 - ACS Publications
We investigate the mechanism of NH 3 adsorption and initial decomposition on the (2×1)
reconstructed Si(100) surface using B3LYP density functional theory. The Si(100)-(2×1) surface …
reconstructed Si(100) surface using B3LYP density functional theory. The Si(100)-(2×1) surface …
Predicted biological activity of purchasable chemical space
…, G Gaskins, T Sterling, MM Mysinger… - Journal of chemical …, 2018 - ACS Publications
Whereas 400 million distinct compounds are now purchasable within the span of a few
weeks, the biological activities of most are unknown. To facilitate access to new chemistry for …
weeks, the biological activities of most are unknown. To facilitate access to new chemistry for …
[BOOK][B] Ligand Desolvation in Molecular Docking (How, Why, and With What?)
MML Mysinger - 2012 - search.proquest.com
Ultimately, our bodies are biochemical factories of diabolical complexity. As scaffolds,
reactors, engines, and signals, proteins are our essential building-blocks. Drugs, with their …
reactors, engines, and signals, proteins are our essential building-blocks. Drugs, with their …
CAR is not required for adenovirus infection: Integrin alpha v beta 5 mediates binding to CAR-negative cells
C Mysinger - 2009 - search.proquest.com
… Cynthia Mysinger … And last but by no means least, I would like to thank my husband,
Michael Mysinger, for his support, his love, and his confidence in me. …
Michael Mysinger, for his support, his love, and his confidence in me. …