User profiles for Wei Shi

Wei Shi

- Verified email at onjcri.org.au - Cited by 67329

Wei Shi

- Verified email at jhu.edu - Cited by 9262

Wei Shi

- Verified email at alibaba-inc.com - Cited by 2556

[PDF][PDF] Attention-based bidirectional long short-term memory networks for relation classification

P Zhou, W Shi, J Tian, Z Qi, B Li, H Hao… - Proceedings of the 54th …, 2016 - aclanthology.org
Relation classification is an important semantic processing task in the field of natural language
processing (NLP). State-ofthe-art systems still rely on lexical resources such as WordNet …

[HTML][HTML] limma powers differential expression analyses for RNA-sequencing and microarray studies

…, B Phipson, DI Wu, Y Hu, CW Law, W Shi… - Nucleic acids …, 2015 - academic.oup.com
limma is an R/Bioconductor software package that provides an integrated solution for analysing
data from gene expression experiments. It contains rich features for handling complex …

North American regional reanalysis

…, H Li, Y Lin, G Manikin, D Parrish, W Shi - Bulletin of the …, 2006 - journals.ametsoc.org
In 1997, during the late stages of production of NCEP–NCAR Global Reanalysis (GR),
exploration of a regional reanalysis project was suggested by the GR project's Advisory …

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Y Liao, GK Smyth, W Shi - Bioinformatics, 2014 - academic.oup.com
Motivation: Next-generation sequencing technologies generate millions of short sequence
reads, which are usually aligned to a reference genome. In many applications, the key …

Durability of mRNA-1273 vaccine–induced antibodies against SARS-CoV-2 variants

…, PA Rebolledo, CA Rostad, NG Rouphael, W Shi… - Science, 2021 - science.org
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) mutations may diminish
vaccine-induced protective immune responses, particularly as antibody titers wane over time. …

[HTML][HTML] voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

CW Law, Y Chen, W Shi, GK Smyth - Genome biology, 2014 - Springer
New normal linear modeling strategies are presented for analyzing read counts from RNA-seq
experiments. The voom method estimates the mean-variance relationship of the log-…

Stabilizing black-phase formamidinium perovskite formation at room temperature and high humidity

W Hui, L Chao, H Lu, F Xia, Q Wei, Z Su, T Niu, L Tao… - Science, 2021 - science.org
The stabilization of black-phase formamidinium lead iodide (α-FAPbI 3 ) perovskite under
various environmental conditions is considered necessary for solar cells. However, challenges …

[HTML][HTML] SARS-CoV-2 mRNA vaccine design enabled by prototype pathogen preparedness

…, M Metkar, V Presnyak, C Liu, MK Louder, W Shi… - Nature, 2020 - nature.com
A vaccine for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is needed to
control the coronavirus disease 2019 (COVID-19) global pandemic. Structural studies have …

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

Y Liao, GK Smyth, W Shi - Nucleic acids research, 2013 - academic.oup.com
Read alignment is an ongoing challenge for the analysis of data from sequencing technologies.
This article proposes an elegantly simple multi-seed strategy, called seed-and-vote, for …

[HTML][HTML] Genomewide association study of leprosy

…, YQ Liu, RY Liu, DM Wang, D Wei… - … England Journal of …, 2009 - Mass Medical Soc
Background The narrow host range of Mycobacterium leprae and the fact that it is refractory
to growth in culture has limited research on and the biologic understanding of leprosy. Host …