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Drug Metabolism & Disposition

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Label-Free but Still Constrained: Assessment of Global Proteomic Strategies for the Quantification of Hepatic Enzymes and Transporters

Jill Barber, Zubida M. Al-Majdoub, Narciso Couto, Areti-Maria Vasilogianni, Annika Tillmann, Sarah Alrubia, Amin Rostami-Hodjegan and Brahim Achour
Drug Metabolism and Disposition March 20, 2022, DMD-AR-2021-000780; DOI: https://doi.org/10.1124/dmd.121.000780
Jill Barber
1Pharmacy and Pharmaceutical Sciences, University of Manchester, United Kingdom
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Zubida M. Al-Majdoub
2Division of Pharmacy and Optometry, University of Manchester, United Kingdom
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Narciso Couto
3Department of Chemical and Biological Engineering, University of Sheffield, United Kingdom
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Areti-Maria Vasilogianni
4University of Manchester, United Kingdom
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Annika Tillmann
5Centre for Applied Pharmacokinetic Research, University of Manchester, United Kingdom
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Sarah Alrubia
5Centre for Applied Pharmacokinetic Research, University of Manchester, United Kingdom
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Amin Rostami-Hodjegan
6Systems Pharmacology, Manchester Pharmacy School, University of Manchester, United Kingdom
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Brahim Achour
5Centre for Applied Pharmacokinetic Research, University of Manchester, United Kingdom
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  • For correspondence: brahim.achour@manchester.ac.uk
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    • Supplemental Data -

      Supplemental Table 1. Demographic and clinical details of the donors of the 27 liver samples.

       Supplemental Table 2. Agreement in identification between technical replicates. 

      Supplemental Table 3. Similarity matrix between biological samples based on percent identical peptide (PIP).

      Supplemental Table 4. Abundance (in pmol mg-1) of cytochrome P450 enzymes, UGT enzymes, ABC transporters, and solute carriers using HiN with BSA as a standard.

      Supplemental Table 5. Abundance (in pmol mg-1) of cytochrome P450 enzymes, UGT enzymes, ABC transporters, and solute carriers using iBAQ with BSA as a standard.

      Supplemental Table 6. Abundance (in pmol mg-1) of cytochrome P450 enzymes, UGT enzymes, ABC transporters, and solute carriers using the TPA method.

      Supplemental Table 7. Effect of age, body mass index (BMI) and genotype on the abundance of enzymes and transporters measured using HiN, iBAQ and TPA label-free methods.

      Supplemental Figure 1. Relative abundance of (A) CYPs, (B) UGTs and (C) ABC transporters in human liver determined using either HiN, iBAQ or TPA.

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Drug Metabolism and Disposition: 51 (4)
Drug Metabolism and Disposition
Vol. 51, Issue 4
1 Apr 2023
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Critique of Label-Free Proteomics of Pharmacokinetic Targets

Jill Barber, Zubida M. Al-Majdoub, Narciso Couto, Areti-Maria Vasilogianni, Annika Tillmann, Sarah Alrubia, Amin Rostami-Hodjegan and Brahim Achour
Drug Metabolism and Disposition March 20, 2022, DMD-AR-2021-000780; DOI: https://doi.org/10.1124/dmd.121.000780

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Critique of Label-Free Proteomics of Pharmacokinetic Targets

Jill Barber, Zubida M. Al-Majdoub, Narciso Couto, Areti-Maria Vasilogianni, Annika Tillmann, Sarah Alrubia, Amin Rostami-Hodjegan and Brahim Achour
Drug Metabolism and Disposition March 20, 2022, DMD-AR-2021-000780; DOI: https://doi.org/10.1124/dmd.121.000780
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