SNP No. | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 |
---|---|---|---|---|---|---|---|---|---|---|---|
rs No. | N.A. | 2239859 | 1005696 | 1005695 | 2835265 | 2835266 | 20572 | 2230192 | 9024 | 998384 | 998383 |
B (= minor) allele freq. | 0.03 | 0.44 | 0.49 | 0.43 | 0.18 | 0.03 | 0.18 | 0.01 | 0.21 | 0.35 | 0.35 |
Genotypes AA, AB, BB | 55, 1, 1 | 24, 16, 17 | 18, 22, 17 | 19, 27, 11 | 41, 11, 5 | 54, 3, 0 | 41, 11, 5 | 56, 1, 0 | 38, 14, 5 | 25, 24, 8 | 25, 24, 8 |
χ2 | <0.001 | 0.005 | 0.23 | 0.97 | 0.03 | 0.98 | 0.03 | 1 | 0.14 | 0.85 | 0.85 |
Haplotypes (frequency) | |||||||||||
H1 (25.4%) | T | T | G | C | G | C | G | G | G | C | |
H2 (22.3%) | G | G | C | C | G | C | G | G | C | G | |
H3 (13.5%) | T | T | G | T | G | T | G | A | G | C | |
H4 (5.1%) | G | G | C | C | G | C | G | G | G | C | |
H5 (4.8%) | T | G | C | C | G | C | G | G | C | G | |
H6 (3.1%) | G | G | G | C | G | C | G | G | G | C | |
H7 (2.8%) | T | G | G | C | G | C | G | G | G | C | |
H8 (2.6%) | G | G | C | C | A | C | G | G | G | C | |
H9 (2.5%) |
|
G
| T | G | C | G | C | G | G | G | C |
N.A., not available.