Skip to main content
Log in

Characterization of the versatile monooxygenase CYP109B1 from Bacillus subtilis

  • Biotechnologically Relevant Enzymes and Proteins
  • Published:
Applied Microbiology and Biotechnology Aims and scope Submit manuscript

Abstract

The oxidizing activity of CYP109B1 from Bacillus subtilis was reconstituted in vitro with various artificial redox proteins including putidaredoxin reductase and putidaredoxin from Pseudomonas putida, truncated bovine adrenodoxin reductase and adrenodoxin, flavodoxin reductase and flavodoxin from Escherichia coli, and two flavodoxins from B. subtilis (YkuN and YkuP). Binding and oxidation of a broad range of chemically different substrates (fatty acids, n-alkanes, primary n-alcohols, terpenoids like (+)-valencene, α- and β-ionone, and the steroid testosterone) were investigated. CYP109B1was found to oxidize saturated fatty acids (conversion up to 99%) and their methyl and ethyl esters (conversion up to 80%) at subterminal positions with a preference for the carbon atoms C11 and C12 counted from the carboxyl group. For the hydroxylation of primary n-alcohols, the ω−2 position was preferred. n-Alkanes were not accepted as substrates by CYP109B1. Regioselective hydroxylation of terpenoids α-ionone (∼70% conversion) and β-ionone (∼ 91% conversion) yielded the allylic alcohols 3-hydroxy-α-ionone and 4-hydroxy-β-ionone, respectively. Furthermore, indole was demonstrated to inhibit fatty acid oxidation.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

References

  • Agematu H, Matsumoto N, Fujii Y, Kabumoto H, Doi S, Machida K, Ishikawa J, Arisawa A (2006) Hydroxylation of testosterone by bacterial cytochromes P450 using the Escherichia coli expression system. Biosci Biotechnol Biochem 70:307–311

    Article  CAS  Google Scholar 

  • Arisawa A, Agematu H (2007) A modular approach to biotransformation using microbial cytochrome P450 monooxygenases. In: Schmid RD, Urlacher VB (eds) Modern biooxidation, 1st edn. Wiley-VCH, Weinheim, pp 177–192

    Google Scholar 

  • Bell SG, Wong LL (2007) P450 enzymes from the bacterium Novosphingobium aromaticivorans. Biochem Biophys Res Commun 360:666–672

    Article  CAS  Google Scholar 

  • Bell SG, Dale A, Rees NH, Wong LL (2009) A cytochrome P450 class I electron transfer system from Novosphingobium aromaticivorans. Appl Microbiol Biotechnol. doi:10.1007/s00253-009-2234-y

  • Bernhardt R (2006) Cytochromes P450 as versatile biocatalysts. J Biotechnol 124:128–145

    Article  CAS  Google Scholar 

  • Budde M, Maurer SC, Schmid RD, Urlacher VB (2004) Cloning, expression and characterisation of CYP102A2, a self-sufficient P450 monooxygenase from Bacillus subtilis. Appl Microbiol Biotechnol 66:180–186

    Article  CAS  Google Scholar 

  • Celik A, Flitsch SL, Turner NJ (2005) Efficient terpene hydroxylation catalysts based upon P450 enzymes derived from actinomycetes. Org Biomol Chem 3:2930–2934

    Article  CAS  Google Scholar 

  • Chu JW, Kimura T (1973) Studies on adrenal steroid hydroxylases. Molecular and catalytic properties of adrenodoxin reductase (a flavoprotein). J Biol Chem 248:2089–2094

    CAS  Google Scholar 

  • Correia MA, Oritz de Montellano PR (2005) Inhibition of cytochrome P450 enzymes. In: Oritz de Montellano PR (ed) Cytochrome P450: structure, mechanism, and biochemistry, 3rd edn. Springer, Berlin, pp 247–322

    Google Scholar 

  • Cryle MJ, Stok JE, De Voss JJ (2003) Reactions catalyzed by bacterial cytochromes P450. Aust J Chem 56:749–762

    Article  CAS  Google Scholar 

  • Endo H, Yonetani Y, Mizoguchi H, Hashimoto S, Ozaki A (2000) Process for producing HMG-CoA reductase inhibitor. Patent WO/2000/044886

  • Ewen KM, Hannemann F, Khatri Y, Perlova O, Kappl R, Krug D, Huttermann J, Muller R, Bernhardt R (2009) Genome mining in Sorangium cellulosum So ce56: identification and characterization of the homologous electron transfer proteins of a myxobacterial cytochrome P450. J Biol Chem 284:28590–28598

    Article  CAS  Google Scholar 

  • Fischer M, Knoll M, Sirim D, Wagner F, Funke S, Pleiss J (2007) The cytochrome P450 engineering database: a navigation and prediction tool for the cytochrome P450 protein family. Bioinformatics 23:2015–2017

    Article  CAS  Google Scholar 

  • Fraatz MA, Berger RG, Zorn H (2009) Nootkatone—a biotechnological challenge. Appl Microbiol Biotechnol 83:35–41

    Article  CAS  Google Scholar 

  • Fujii K, Huennekens FM (1974) Activation of methionine synthetase by a reduced triphosphopyridine nucleotide-dependent flavoprotein system. J Biol Chem 249:6745–6753

    CAS  Google Scholar 

  • Furuya T, Nishi T, Shibata D, Suzuki H, Ohta D, Kino K (2008) Characterization of orphan monooxygenases by rapid substrate screening using FT-ICR mass spectrometry. Chem Biol 15:563–572

    Article  CAS  Google Scholar 

  • Girhard M, Schuster S, Dietrich M, Durre P, Urlacher VB (2007) Cytochrome P450 monooxygenase from Clostridium acetobutylicum: a new alpha-fatty acid hydroxylase. Biochem Biophys Res Commun 362:114–119

    Article  CAS  Google Scholar 

  • Girhard M, Machida K, Itoh M, Schmid RD, Arisawa A, Urlacher VB (2009) Regioselective biooxidation of (+)-valencene by recombinant E. coli expressing CYP109B1 from Bacillus subtilis in a two-liquid-phase system. Microb Cell Fact 8:36

    Article  Google Scholar 

  • Goni G, Zollner A, Lisurek M, Velazquez-Campoy A, Pinto S, Gomez-Moreno C, Hannemann F, Bernhardt R, Medina M (2009) Cyanobacterial electron carrier proteins as electron donors to CYP106A2 from Bacillus megaterium ATCC 13368. Biochim Biophys Acta 1794:1635–1642

    CAS  Google Scholar 

  • Green AJ, Munro AW, Cheesman MR, Reid GA, von Wachenfeldt C, Chapman SK (2003) Expression, purification and characterisation of a Bacillus subtilis ferredoxin: a potential electron transfer donor to cytochrome P450 BioI. J Inorg Biochem 93:92–99

    Article  CAS  Google Scholar 

  • Gustafsson MC, Roitel O, Marshall KR, Noble MA, Chapman SK, Pessegueiro A, Fulco AJ, Cheesman MR, von Wachenfeldt C, Munro AW (2004) Expression, purification, and characterization of Bacillus subtilis cytochromes P450 CYP102A2 and CYP102A3: flavocytochrome homologues of P450 BM3 from Bacillus megaterium. Biochemistry 43:5474–5487

    Article  CAS  Google Scholar 

  • Hannemann F, Bera AK, Fischer B, Lisurek M, Teuchner K, Bernhardt R (2002) Unfolding and conformational studies on bovine adrenodoxin probed by engineered intrinsic tryptophan fluorescence. Biochemistry 41:11008–11016

    Article  CAS  Google Scholar 

  • Hannemann F, Virus C, Bernhardt R (2006) Design of an Escherichia coli system for whole cell mediated steroid synthesis and molecular evolution of steroid hydroxylases. J Biotechnol 124:172–181

    Article  CAS  Google Scholar 

  • Hannemann F, Bichet A, Ewen KM, Bernhardt R (2007) Cytochrome P450 systems—biological variations of electron transport chains. Biochim Biophys Acta 1770:330–344

    CAS  Google Scholar 

  • Huang JJ, Kimura T (1973) Studies on adrenal steroid hydroxylases. Oxidation–reduction properties of adrenal iron–sulfur protein (adrenodoxin). Biochemistry 12:406–409

    Article  CAS  Google Scholar 

  • Jenkins CM, Waterman MR (1998) NADPH-flavodoxin reductase and flavodoxin from Escherichia coli: characteristics as a soluble microsomal P450 reductase. Biochemistry 37:6106–6113

    Article  CAS  Google Scholar 

  • Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessieres P, Bolotin A, Borchert S, Borriss R, Boursier L, Brans A, Braun M, Brignell SC, Bron S, Brouillet S, Bruschi CV, Caldwell B, Capuano V, Carter NM, Choi SK, Codani JJ, Connerton IF, Danchin A et al (1997) The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390:249–256

    Article  CAS  Google Scholar 

  • Lawson RJ, Leys D, Sutcliffe MJ, Kemp CA, Cheesman MR, Smith SJ, Clarkson J, Smith WE, Haq I, Perkins JB, Munro AW (2004a) Thermodynamic and biophysical characterization of cytochrome P450 BioI from Bacillus subtilis. Biochemistry 43:12410–12426

    Article  CAS  Google Scholar 

  • Lawson RJ, von Wachenfeldt C, Haq I, Perkins J, Munro AW (2004b) Expression and characterization of the two flavodoxin proteins of Bacillus subtilis, YkuN and YkuP: biophysical properties and interactions with cytochrome P450 BioI. Biochemistry 43:12390–12409

    Article  CAS  Google Scholar 

  • Mandai T, Fujiwara S, Imaoka S (2009) A novel electron transport system for thermostable CYP175A1 from Thermus thermophilus HB27. Febs J 276:2416–2429

    Article  CAS  Google Scholar 

  • Matsuzaki F, Wariishi H (2004) Functional diversity of cytochrome P450s of the white-rot fungus Phanerochaete chrysosporium. Biochem Biophys Res Commun 324:387–393

    Article  CAS  Google Scholar 

  • Maurer S, Urlacher V, Schulze H, Schmid RD (2003) Immobilisation of P450 BM-3 and an NADP+ cofactor recycling system: towards a technical application of heme-containing monooxygenases in fine chemical synthesis. Adv Synth Catal 345:802–810

    Article  CAS  Google Scholar 

  • McIver L, Leadbeater C, Campopiano DJ, Baxter RL, Daff SN, Chapman SK, Munro AW (1998) Characterisation of flavodoxin NADP+ oxidoreductase and flavodoxin; key components of electron transfer in Escherichia coli. Eur J Biochem 257:577–585

    Article  CAS  Google Scholar 

  • Meyer K (2002) Colorful antioxidants—carotenoids: significance and technical syntheses. Chem Unserer Zeit 36:178–192

    CAS  Google Scholar 

  • Miura Y, Fulco AJ (1975) Omega-1, Omega-2 and Omega-3 hydroxylation of long-chain fatty acids, amides and alcohols by a soluble enzyme system from Bacillus megaterium. Biochim Biophys Acta 388:305–317

    CAS  Google Scholar 

  • Nelson DR (2006) Cytochrome P450 nomenclature, 2004. Methods Mol Biol 320:1–10

    CAS  Google Scholar 

  • Omura T, Sato R (1964a) The carbon monoxide-binding pigment of liver microsomes. I. Evidence for its hemoprotein nature. J Biol Chem 239:2370–2378

    CAS  Google Scholar 

  • Omura T, Sato R (1964b) The carbon monoxide-binding pigment of liver microsomes. II. Solubilization, purification, and properties. J Biol Chem 239:2379–2385

    CAS  Google Scholar 

  • Purdy MM, Koo LS, Ortiz de Montellano PR, Klinman JP (2004) Steady-state kinetic investigation of cytochrome P450cam: interaction with redox partners and reaction with molecular oxygen. Biochemistry 43:271–281

    Article  CAS  Google Scholar 

  • Sagara Y, Wada A, Takata Y, Waterman MR, Sekimizu K, Horiuchi T (1993) Direct expression of adrenodoxin reductase in Escherichia coli and the functional characterization. Biol Pharm Bull 16:627–630

    CAS  Google Scholar 

  • Sambrook J, Russell D (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York

    Google Scholar 

  • Schenkman JB, Sligar SG, Cinti DL (1981) Substrate interaction with cytochrome P-450. Pharmacol Ther 12:43–71

    Article  CAS  Google Scholar 

  • Sevrioukova I, Truan G, Peterson JA (1996) The flavoprotein domain of P450BM-3: expression, purification, and properties of the flavin adenine dinucleotide- and flavin mononucleotide-binding subdomains. Biochemistry 35:7528–7535

    Article  CAS  Google Scholar 

  • Sirim D, Wagner F, Lisitsa A, Pleiss J (2009) The cytochrome P450 engineering database: integration of biochemical properties. BMC Biochem 10:27

    Article  Google Scholar 

  • Sowden RJ, Yasmin S, Rees NH, Bell SG, Wong LL (2005) Biotransformation of the sesquiterpene (+)-valencene by cytochrome P450cam and P450BM-3. Org Biomol Chem 3:57–64

    Article  CAS  Google Scholar 

  • Uhlmann H, Kraft R, Bernhardt R (1994) C-terminal region of adrenodoxin affects its structural integrity and determines differences in its electron transfer function to cytochrome P-450. J Biol Chem 269:22557–22564

    CAS  Google Scholar 

  • Urlacher VB, Makhsumkhanov A, Schmid RD (2006) Biotransformation of beta-ionone by engineered cytochrome P450 BM-3. Appl Microbiol Biotechnol 70:53–59

    Article  CAS  Google Scholar 

  • Virus C, Bernhardt R (2008) Molecular evolution of a steroid hydroxylating cytochrome P450 using a versatile steroid detection system for screening. Lipids 43:1133–1141

    Article  CAS  Google Scholar 

  • Virus C, Lisurek M, Simgen B, Hannemann F, Bernhardt R (2006) Function and engineering of the 15beta-hydroxylase CYP106A2. Biochem Soc Trans 34:1215–1218

    Article  CAS  Google Scholar 

  • Wang ZQ, Lawson RJ, Buddha MR, Wei CC, Crane BR, Munro AW, Stuehr DJ (2007) Bacterial flavodoxins support nitric oxide production by Bacillus subtilis nitric-oxide synthase. J Biol Chem 282:2196–2202

    Article  CAS  Google Scholar 

Download references

Acknowledgments

We wish to thank Kyoko Momoi, Sumire Honda Malca, and Svetlana Tihovsky (Universitaet Stuttgart) for their help in preparation of Fdx and cloning of FdR, YkuN, and YkuP. We are also thankful to Wolfgang Reinle for expression and purification of Adx and AdR. MG, TK, and VBU acknowledge the support of this work by Deutsche Forschungsgemeinschaft (SFB706) and Ministerium für Wissenschaft, Forschung und Kunst Baden-Württemberg.

Conflict of interest

The authors declare that they have no conflict of interest.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Vlada B. Urlacher.

Electronic supplementary material

Below is the link to the electronic supplementary material.

ESM 1

Electronic supplementary material (DOC 223 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Girhard, M., Klaus, T., Khatri, Y. et al. Characterization of the versatile monooxygenase CYP109B1 from Bacillus subtilis . Appl Microbiol Biotechnol 87, 595–607 (2010). https://doi.org/10.1007/s00253-010-2472-z

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00253-010-2472-z

Keywords

Navigation