Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1990 1
1991 4
1992 1
1993 1
2004 1
2005 1
2008 1
2009 2
2010 2
2011 3
2012 7
2013 8
2014 7
2015 10
2016 11
2017 6
2018 5
2019 5
2020 5
2021 9
2022 3
2023 6
2024 1

Text availability

Article attribute

Article type

Publication date

Search Results

92 results

Results by year

Filters applied: . Clear all
Page 1
PDBsum additions.
de Beer TA, Berka K, Thornton JM, Laskowski RA. de Beer TA, et al. Among authors: berka k. Nucleic Acids Res. 2014 Jan;42(Database issue):D292-6. doi: 10.1093/nar/gkt940. Epub 2013 Oct 22. Nucleic Acids Res. 2014. PMID: 24153109 Free PMC article.
In silico pharmacology: Drug membrane partitioning and crossing.
Di Meo F, Fabre G, Berka K, Ossman T, Chantemargue B, Paloncýová M, Marquet P, Otyepka M, Trouillas P. Di Meo F, et al. Among authors: berka k. Pharmacol Res. 2016 Sep;111:471-486. doi: 10.1016/j.phrs.2016.06.030. Epub 2016 Jul 1. Pharmacol Res. 2016. PMID: 27378566 Review.
OverProt: secondary structure consensus for protein families.
Midlik A, Hutařová Vařeková I, Hutař J, Chareshneu A, Berka K, Svobodová R. Midlik A, et al. Among authors: berka k. Bioinformatics. 2022 Jul 11;38(14):3648-3650. doi: 10.1093/bioinformatics/btac384. Bioinformatics. 2022. PMID: 35674374
The Role of Protein-Protein and Protein-Membrane Interactions on P450 Function.
Scott EE, Wolf CR, Otyepka M, Humphreys SC, Reed JR, Henderson CJ, McLaughlin LA, Paloncýová M, Navrátilová V, Berka K, Anzenbacher P, Dahal UP, Barnaba C, Brozik JA, Jones JP, Estrada DF, Laurence JS, Park JW, Backes WL. Scott EE, et al. Among authors: berka k. Drug Metab Dispos. 2016 Apr;44(4):576-90. doi: 10.1124/dmd.115.068569. Epub 2016 Feb 5. Drug Metab Dispos. 2016. PMID: 26851242 Free PMC article. Review.
ELIXIR and Toxicology: a community in development.
Martens M, Stierum R, Schymanski EL, Evelo CT, Aalizadeh R, Aladjov H, Arturi K, Audouze K, Babica P, Berka K, Bessems J, Blaha L, Bolton EE, Cases M, Damalas DΕ, Dave K, Dilger M, Exner T, Geerke DP, Grafström R, Gray A, Hancock JM, Hollert H, Jeliazkova N, Jennen D, Jourdan F, Kahlem P, Klanova J, Kleinjans J, Kondic T, Kone B, Lynch I, Maran U, Martinez Cuesta S, Ménager H, Neumann S, Nymark P, Oberacher H, Ramirez N, Remy S, Rocca-Serra P, Salek RM, Sallach B, Sansone SA, Sanz F, Sarimveis H, Sarntivijai S, Schulze T, Slobodnik J, Spjuth O, Tedds J, Thomaidis N, Weber RJM, van Westen GJP, Wheelock CE, Williams AJ, Witters H, Zdrazil B, Županič A, Willighagen EL. Martens M, et al. Among authors: berka k. F1000Res. 2023 Oct 3;10:ELIXIR-1129. doi: 10.12688/f1000research.74502.2. eCollection 2021. F1000Res. 2023. PMID: 37842337 Free PMC article.
CATH: increased structural coverage of functional space.
Sillitoe I, Bordin N, Dawson N, Waman VP, Ashford P, Scholes HM, Pang CSM, Woodridge L, Rauer C, Sen N, Abbasian M, Le Cornu S, Lam SD, Berka K, Varekova IH, Svobodova R, Lees J, Orengo CA. Sillitoe I, et al. Among authors: berka k. Nucleic Acids Res. 2021 Jan 8;49(D1):D266-D273. doi: 10.1093/nar/gkaa1079. Nucleic Acids Res. 2021. PMID: 33237325 Free PMC article.
Ion Pathways in the Na+/K+-ATPase.
Čechová P, Berka K, Kubala M. Čechová P, et al. Among authors: berka k. J Chem Inf Model. 2016 Dec 27;56(12):2434-2444. doi: 10.1021/acs.jcim.6b00353. Epub 2016 Dec 14. J Chem Inf Model. 2016. PMID: 27966362
Uncovering of cytochrome P450 anatomy by SecStrAnnotator.
Midlik A, Navrátilová V, Moturu TR, Koča J, Svobodová R, Berka K. Midlik A, et al. Among authors: berka k. Sci Rep. 2021 Jun 11;11(1):12345. doi: 10.1038/s41598-021-91494-8. Sci Rep. 2021. PMID: 34117311 Free PMC article.
MolMeDB: Molecules on Membranes Database.
Juračka J, Šrejber M, Melíková M, Bazgier V, Berka K. Juračka J, et al. Among authors: berka k. Database (Oxford). 2019 Jan 1;2019:baz078. doi: 10.1093/database/baz078. Database (Oxford). 2019. PMID: 31250015 Free PMC article.
92 results