Predicting protein–protein interactions based only on sequences information

J Shen, J Zhang, X Luo, W Zhu, K Yu… - Proceedings of the …, 2007 - National Acad Sciences
Protein–protein interactions (PPIs) are central to most biological processes. Although efforts
have been devoted to the development of methodology for predicting PPIs and protein …

Prognostic value of C-reactive protein in patients with coronavirus 2019

X Luo, W Zhou, X Yan, T Guo, B Wang… - Clinical Infectious …, 2020 - academic.oup.com
Background An elevated serum C-reactive protein (CRP) level was observed in most patients
with coronavirus disease 2019 (COVID-19). Methods Data for COVID-19 patients with …

Pushing the boundaries of molecular representation for drug discovery with the graph attention mechanism

…, X Liu, F Zhong, X Wan, X Li, Z Li, X Luo… - Journal of medicinal …, 2019 - ACS Publications
Hunting for chemicals with favorable pharmacological, toxicological, and pharmacokinetic
properties remains a formidable challenge for drug discovery. Deep learning provides us with …

TarFisDock: a web server for identifying drug targets with docking approach

…, L Kang, H Zhang, K Yang, K Yu, X Luo… - Nucleic acids …, 2006 - academic.oup.com
TarFisDock is a web-based tool for automating the procedure of searching for small
molecule–protein interactions over a large repertoire of protein structures. It offers PDTD (potential …

TransformerCPI: improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments

…, X Tan, D Wang, F Zhong, X Liu, T Yang, X Luo… - …, 2020 - academic.oup.com
Motivation Identifying compound–protein interaction (CPI) is a crucial task in drug discovery
and chemogenomics studies, and proteins without three-dimensional structure account for a …

[HTML][HTML] PDTD: a web-accessible protein database for drug target identification

Z Gao, H Li, H Zhang, X Liu, L Kang, X Luo, W Zhu… - BMC …, 2008 - Springer
Background Target identification is important for modern drug discovery. With the advances
in the development of molecular docking, potential binding proteins may be discovered by …

In silico ADME/T modelling for rational drug design

…, J Peng, Z Xiong, X Liu, X Luo, C Luo… - Quarterly reviews of …, 2015 - cambridge.org
In recent decades, in silico absorption, distribution, metabolism, excretion (ADME), and toxicity
(T) modelling as a tool for rational drug design has received considerable attention from …

Conformational transition of amyloid β-peptide

Y Xu, J Shen, X Luo, W Zhu, K Chen… - Proceedings of the …, 2005 - National Acad Sciences
The amyloid β-peptides (Aβs), containing 39–43 residues, are the key protein components of
amyloid deposits in Alzheimer's disease. To structurally characterize the dynamic behavior …

Cinanserin is an inhibitor of the 3C-like proteinase of severe acute respiratory syndrome coronavirus and strongly reduces virus replication in vitro

L Chen, C Gui, X Luo, Q Yang, S Günther… - Journal of …, 2005 - Am Soc Microbiol
The 3C-like proteinase (3CL pro ) of severe acute respiratory syndrome-associated coronavirus
(SARS-CoV) is one of the most promising targets for anti-SARS-CoV drugs due to its …

Recent advances of collagen-based biomaterials: Multi-hierarchical structure, modification and biomedical applications

X Liu, C Zheng, X Luo, X Wang, H Jiang - Materials Science and …, 2019 - Elsevier
Collagen is the most abundant structural protein of connective tissues including skin, tendon,
bone and cartilage in mammals. The complicated biosynthesis of nature collagen in vivo, …